Python module for processing nanopore sequencing
Project description
PoreFlow
Nanopore data analysis tools
PoreFlow is a fast, simple, and flexible set of tools for analysing raw nanopore sequencing data, intended for use for research in the Cees Dekker lab (and beyond?).
Please see the Documentation for an introductory tutorial and full user guide.
Features
- Python API for storing measurement, event, and step data.
- Event detection algorithm
- Fast step detection algorithm written in C++
- Support for reasarch .fast5 files, along with .dat files from the UTube device
- Filter events with basic metrics and store metadata
- Find DNA-peptide boundary with expected DNA sequence
If you need help with PoreFlow, do not hesitate to get in contact:
- For questions, contact the authors in-person or via email
- To report a bug or make a feature request, open an Issue on GitLab.
Links
Contributing to PoreFlow
Please see the Contributing Guide for information on how you can help develop PoreFlow.
Authors
Thijn Hoekstra, Xiuqi Chen
License
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