poriscope 1.6.1

A tool for selecting and analyzing nanopore data.

SETUP

Note: Conda is not supported. You can make it work, but you're on your own. Make sure you have Python 3.12.10 installed (python --version) to avoid dependencies compatibility issues.

For regular users, you can install the latest stable release of poriscope directly from PyPi using pip or similar. Simply run_

pip install poriscope

As a developer:

git clone https://github.com/TCossaLab/poriscope.git

cd poriscope

pip install -e .

To use a stable version (does not allow retroactive pulls): python -m pip install -U "git+https://github.com/TCossaLab/poriscope.git@main"

Then from any cmd you will be able to run the poriscope command to open the app.

*If you have a previous version of poriscope installed, make sure to run:

pip uninstall poriscope

Post-clone Setup dor developers

After cloning this repo, run:

python scripts/setup_hooks.py (To enable pre-commit and post-merge)

To emulate a pulled run: python .git/hooks/post-merge

Documentation can be found

https://tcossalab.github.io/poriscope/

Poriscope Tutorial Series

https://youtube.com/@tcossalab?si=A8Wy8yHOXiwSXu5F

Data

Tutorial Series data is available on FRDR: https://doi.org/10.20383/103.01599
See data/README.md for download instruction