A tool for selecting and analyzing nanopore data.
Project description
SETUP
Note: Conda is not supported. You can make it work, but you're on your own. Make sure you have Python 3.12.10 installed (python --version) to avoid dependencies compatibility issues.
As a developer:
git clone https://github.com/TCossaLab/poriscope.git
cd poriscope
pip install -e .
To use a stable version (does not allow retroactive pulls): python -m pip install -U "git+https://github.com/TCossaLab/poriscope.git@main"
Then from any cmd you will be able to run the 'poriscope' command to open the app.
*If you have a previous version of poriscope installed, make sure to run:
pip uninstall poriscope
Post-clone Setup dor developers
After cloning this repo, run:
python scripts/setup_hooks.py (To enable pre-commit and post-merge)
To emulate a pulled run: python .git/hooks/post-merge
Documentation can be found
https://tcossalab.github.io/poriscope/
Poriscope Tutorial Series
Release history Release notifications | RSS feed
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