Skip to main content

Convert scientific posters (PDF/images) to structured JSON metadata using Large Language Models

Project description

logo

poster2json

Convert scientific posters (PDF/images) to structured JSON metadata using Large Language Models.


contributors stars open issues license

PyPI Version PyPI Downloads DOI

Documentation · Changelog · Report Bug · Request Feature



Description

poster2json extracts structured metadata from scientific conference posters (PDF or image format) into machine-actionable JSON conforming to the poster-json-schema.

The pipeline uses:

  • Llama-3.1-8B-Instruct (a verbatim mirror of Meta's release; swap with any HuggingFace instruct model via --model) for JSON structuring
  • Qwen2-VL-7B for vision-based OCR of image posters
  • pdfplumber for layout-aware PDF text extraction
  • lingua-language-detector for ISO 639-1 language detection on body text (overrides any value the model emits — body text beats metadata-fragment guessing)
  • ROR (https://api.ror.org) for affiliation and publisher canonicalisation; matched names get a ROR identifier attached
  • SPDX matching (with integer-exact version handling) for license normalisation in rightsList

Quick Start

Installation

pip install poster2json

CLI Usage

# Extract metadata from a poster (default: Llama-3.1-8B-Instruct @ 4bit)
poster2json extract poster.pdf -o result.json

# Use a different instruct model (any HuggingFace repo id works)
poster2json extract poster.pdf --model google/gemma-2-9b-it --quantization 4bit

# Trade VRAM for quality
poster2json extract poster.pdf --quantization 8bit
poster2json extract poster.pdf --quantization fp16

# Validate extracted JSON
poster2json validate result.json

# Process multiple posters
poster2json batch ./posters/ -o ./output/

Python API

from poster2json import extract_poster, validate_poster

# Extract metadata
result = extract_poster("poster.pdf")
print(result["titles"][0]["title"])

# Validate the result
is_valid = validate_poster(result)

Output Format

Output conforms to the poster-json-schema (DataCite 4.7):

{
  "$schema": "https://posters.science/schema/v0.2/poster_schema.json",
  "creators": [
    {
      "name": "Garcia, Sofia",
      "givenName": "Sofia",
      "familyName": "Garcia",
      "affiliation": [
        {
          "name": "Stanford University",
          "affiliationIdentifier": "https://ror.org/00f54p054",
          "affiliationIdentifierScheme": "ROR",
          "schemeUri": "https://ror.org/"
        }
      ]
    }
  ],
  "titles": [
    { "title": "Machine Learning Approaches to Diabetic Retinopathy Detection" }
  ],
  "publicationYear": 2025,
  "language": "en",
  "researchField": "Health Sciences",
  "subjects": [
    { "subject": "Machine Learning" },
    { "subject": "Diabetic Retinopathy" }
  ],
  "descriptions": [
    { "description": "We present a deep learning model...", "descriptionType": "Abstract" }
  ],
  "publisher": { "name": "Zenodo" },
  "rightsList": [
    {
      "rights": "Creative Commons Attribution 4.0 International",
      "rightsIdentifier": "CC-BY-4.0",
      "rightsIdentifierScheme": "SPDX",
      "schemeUri": "https://spdx.org/licenses/",
      "rightsUri": "https://creativecommons.org/licenses/by/4.0/"
    }
  ],
  "content": {
    "sections": [
      { "sectionTitle": "Abstract", "sectionContent": "..." },
      { "sectionTitle": "Methods", "sectionContent": "..." },
      { "sectionTitle": "Results", "sectionContent": "..." }
    ]
  },
  "imageCaptions": [{ "id": "fig1", "caption": "Figure 1. ROC curves showing..." }],
  "tableCaptions": [{ "id": "table1", "caption": "Table 1. Performance metrics" }]
}

Notes on the auto-populated fields:

  • language is detected from the raw body text (lingua heuristic). Returns null when text is too short (<200 chars / <50 non-ASCII codepoints) or the detector is unsure.
  • researchField must be one of the four OpenAlex top-level domains: Health Sciences, Life Sciences, Physical Sciences, Social Sciences. Null when the model can't pick one confidently.
  • affiliation and publisher get ROR enrichment when the matcher returns a high-confidence chosen result. Strings without a confident match pass through unchanged. Set POSTER2JSON_ROR=0 to disable.
  • rightsList entries are matched against an SPDX table; the matcher is conservative on version numbers (e.g. CC-BY-4.0 and CC-BY-4.1 are never confused).

System Requirements

Requirement Specification
GPU NVIDIA CUDA-capable, ≥8GB VRAM (default 4bit); ≥16GB for --quantization fp16 or image/OCR posters
RAM ≥32GB recommended
Python 3.10+
OS Linux, macOS, Windows (via WSL2)

Performance

Validated on 20 manually annotated scientific posters (19 PDF via pdfplumber, 1 image via vision OCR):

Metric Score Threshold
Word Capture 0.92 ≥0.75
ROUGE-L 0.85 ≥0.75
Number Capture 0.97 ≥0.75
Field Proportion 0.88 0.50–1.50

Pass Rate: 19/20 (95%). The single failure is a dense table/flowchart poster whose reference annotation splits one visual region into many fine-grained sections.

Documentation

Document Description
Architecture Technical details & methodology
Evaluation Validation metrics & results

Development Setup

# Clone the repository
git clone https://github.com/fairdataihub/poster2json.git
cd poster2json

# Create a virtual environment
python -m venv .venv

# Activate the virtual environment
source venv/bin/activate
.venv\Scripts\activate # On Windows

# Install poetry
pip install poetry

# Install dependencies
poetry install

# Run tests
poe test

# Format code
poe format

If you are on windows and have multiple python versions, you can use the following commands:

py -0p # list all python versions

py -3.12 -m venv .venv

License

MIT License - see LICENSE for details.

Citation

@software{poster2json2026,
  title = {poster2json: Scientific Poster to JSON Metadata Extraction},
  author = {O'Neill, James and Soundarajan, Sanjay and Portillo, Dorian and Patel, Bhavesh},
  year = {2026},
  version = {0.8.0},
  url = {https://github.com/fairdataihub/poster2json},
  doi = {10.5281/zenodo.18320010}
}

Funding

This project is funded by The Navigation Fund (10.71707/rk36-9x79).

Contributing

Contributions welcome! Please see CONTRIBUTING.md for guidelines.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

poster2json-0.9.0.tar.gz (72.7 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

poster2json-0.9.0-py3-none-any.whl (77.1 kB view details)

Uploaded Python 3

File details

Details for the file poster2json-0.9.0.tar.gz.

File metadata

  • Download URL: poster2json-0.9.0.tar.gz
  • Upload date:
  • Size: 72.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/2.4.1 CPython/3.12.13 Linux/6.17.0-1015-azure

File hashes

Hashes for poster2json-0.9.0.tar.gz
Algorithm Hash digest
SHA256 3345419e0744984f73e0e1465f74614c6278595aed858ede14392146045045b3
MD5 4f5479e1001fd7e0aa4b8149b84b28e0
BLAKE2b-256 de5bdb8146eed9515042f7615ab4b57f99693e0f990c9dcb7d511a73a74f7b62

See more details on using hashes here.

File details

Details for the file poster2json-0.9.0-py3-none-any.whl.

File metadata

  • Download URL: poster2json-0.9.0-py3-none-any.whl
  • Upload date:
  • Size: 77.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/2.4.1 CPython/3.12.13 Linux/6.17.0-1015-azure

File hashes

Hashes for poster2json-0.9.0-py3-none-any.whl
Algorithm Hash digest
SHA256 de788f738043f0c57d6bbc63e031060352298c7175a57ea04fcf14b08bc3a3f4
MD5 c02c4cc2c7812ce3b01cb35dab96709b
BLAKE2b-256 d64bf93105eef1c4e6543da4e8a41f5f3ac5f88dd7e9465a85297c9089f49125

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page