A library for annotating a protein-protein interaction network using differentially expressed gene information
INPUT FILES
There are 4 files which are necessary to run this program:
A protein-protein interaction network in the format of:
Entrez ID Entrez ID Confidence score
Such as:
216 216 0.76
3679 1134 0.73
55607 71 0.65
5552 960 0.63
2886 2064 0.9
5058 2064 0.73
1742 2064 0.87
An example of such a network can be found [here](http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/download.php)
An experiment file, in Excel format. Rows show individual entries, columns are the values of the following properties:
Log2 fold change
Adjusted p value
Entrez id
The file may contain other columns too, but the indices and names of the above columns must be entered as parameters
1 maintainer
Release files for ppi-network-annotation 0.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ppi_network_annotation-0.0.3.tar.gz | 14.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ppi_network_annotation-0.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 29.4 kB
Release files / ppi_network_annotation-0.0.3.tar.gz
| Download URL | ppi_network_annotation-0.0.3.tar.gz |
|---|---|
| Size | 14.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.12.1 pkginfo/1.4.2 requests/2.20.0 setuptools/40.4.3 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0
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Release files / ppi_network_annotation-0.0.3-py3-none-any.whl
| Download URL | ppi_network_annotation-0.0.3-py3-none-any.whl |
|---|---|
| Size | 14.9 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/1.12.1 pkginfo/1.4.2 requests/2.20.0 setuptools/40.4.3 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0
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