ppi-network-annotation 0.0.3

Library for annotating a protein protein interaction network with differential

A library for annotating a protein-protein interaction network using differentially expressed gene information

INPUT FILES

There are 4 files which are necessary to run this program:

1. A protein-protein interaction network in the format of:

   Entrez ID Entrez ID Confidence score

   Such as:

   216 216 0.76

   3679 1134 0.73

   55607 71 0.65

   5552 960 0.63

   2886 2064 0.9

   5058 2064 0.73

   1742 2064 0.87

   An example of such a network can be found [here](http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/download.php)

2. An experiment file, in Excel format. Rows show individual entries, columns are the values of the following properties:

   • Log2 fold change

   • Adjusted p value

   • Entrez id

   The file may contain other columns too, but the indices and names of the above columns must be entered as parameters