A downloader of PPMI metadata and imaging data files.
Example usage
import ppmi_downloader
ppmi = ppmi_downloader.PPMIDownloader()
# Download metadata files
ppmi.download_metadata(['Demographics.csv', 'Age_at_visit.csv'])
# Download 3D imaging metadata
ppmi.download_3D_T1_info()
# Download imaging data (in DICOM format)
ppmi.download_imaging_data([3001, 3003, 3011])
# Download imaging data (in Nifti format)
ppmi.download_imaging_data([3001, 3003, 3011], type='nifti')
Scripts to use Selenium Grid
ppmi_scrapper provides scripts for building and running
selenium webdriver
build_selenium
Build selenium grid singularity container
This function is intended to be used as script
so arguments are passed by environment variables.
PPMI_SINGULARITY_BUILD_CACHE: cache folder to store the built image
PPMI_SINGULARITY_SELENIUM_VERSION: version of selenium used
PPMI_SINGULARITY_BUILD_VERBOSE: enable verbose mode for the build
PPMI_SINGULARITY_BUILD_LOG: log file name to dump build's outputs
Upon success, it exits with 0. Upon failure, Client raises exceptions caught by the script wrapper generated during the build
run_selenium
Run selenium grid singularity container
This function is intended to be used as script
so arguments are passed by environment variables.
PPMI_SINGULARITY_SELENIUM_VERSION: version of selenium used
PPMI_SINGULARITY_RUN_CACHE: cache folder to find the built image
PPMI_SINGULARITY_RUN_VERBOSE: enable verbose mode for the run
PPMI_SINGULARITY_RUN_LOG: log file name to dump run's outputs
Run the selenium grid singularity container by
creating and binding files required by the container
Communication is mapped on 4444 port.
Upon success, it exits with 0. Upon failure, Client raises exceptions caught by the script wrapper generated during the run
1 maintainer
Metadata
1 maintainer
Release files for ppmi-downloader 0.7.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| ppmi_downloader-0.7.6.tar.gz | 57.9 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ppmi_downloader-0.7.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 90.2 kB
Release files / ppmi_downloader-0.7.6.tar.gz
| Download URL | ppmi_downloader-0.7.6.tar.gz |
|---|---|
| Size | 57.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
89846d7915d9a5b73f27711ce6877cc900c3e1ae79e13e0bc5269a7e3403fae0
|
|
BLAKE2b-256 checksum How to use checksums |
a3a1e85bb5d99344dcd6b397e763f6061dcff2f6f41aed147c42b438e26e3453
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.9.20
|
Release files / ppmi_downloader-0.7.6-py3-none-any.whl
| Download URL | ppmi_downloader-0.7.6-py3-none-any.whl |
|---|---|
| Size | 32.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
90bd8f2f6f5f00b81333e88723cb288f6a9b85ad97dcaaa16777aec166d0504c
|
|
BLAKE2b-256 checksum How to use checksums |
77cd1184fb34cfc283b11d29cbbdc8948a1ebedd24c8e175c85bda8eadcb1bec
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.9.20
|
Security for ppmi-downloader 0.7.6
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
