Open-source AI agents for systems biology — BioModels.org discovery, simulation, and comparison
Project description
praisonai-bio
PraisonAI domain plugin for BioModels.org systems biology.
Install
pip install praisonai-bio
# or from source
pip install -e ".[simulation,plot,rag,dev]"
Quick start
import praisonai_bio
from praisonaiagents import Agent
from praisonai_bio.config.presets import DISCOVERY_AGENT
agent = Agent(name="scout", **DISCOVERY_AGENT)
print(agent.start("Find curated glycolysis models"))
Workflows and recipes
import praisonai_bio # required before YAML/CLI toolsets
praisonai workflow run workflows/cookbooks/full_platform_pipeline.yaml
export PRAISONAI_RECIPE_PATH=recipes/bio
praisonai recipe run biomodels-discovery --policy bio-public
MCP
praisonai-bio-mcp
Exposes the full sysbio-full toolset (26 tools).
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