Single-cell genomics preprocessing package
This tool is an automated pipeline for preprocessing single-cell genomics data. It is designed to take raw data (fastq files) from a variety of single-cell genomics platforms and a seqspec file as input, and output a count matrix (RNA) or a fragment file (ATAC) for downstream analysis. The seqspec files for common platforms can be found here: https://github.com/IGVF/seqspec.
Installation
Stable version
pip install precellar
Development version
pip install 'git+https://github.com/regulatory-genomics/precellar.git#egg=precellar&subdirectory=python'
For more information, please refer to the documentation: https://lab.kaizhang.org/precellar/.
1 maintainer
Metadata
1 maintainer
Release files for precellar 0.5.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| precellar-0.5.1-cp313-cp313-manylinux_2_28_x86_64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ x86-64 | Details |
| precellar-0.5.1-cp312-cp312-manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ x86-64 | Details |
| precellar-0.5.1-cp311-cp311-manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ x86-64 | Details |
| precellar-0.5.1-cp310-cp310-manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.28+ x86-64 | Details |
| precellar-0.5.1-cp39-cp39-manylinux_2_28_x86_64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.28+ x86-64 | Details |
Total release size: 76.8 MB
Release files / precellar-0.5.1-cp313-cp313-manylinux_2_28_x86_64.whl
| Download URL | precellar-0.5.1-cp313-cp313-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 15.4 MB |
| Tags | CPython 3.13 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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Transparency logRelease files / precellar-0.5.1-cp312-cp312-manylinux_2_28_x86_64.whl
| Download URL | precellar-0.5.1-cp312-cp312-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 15.4 MB |
| Tags | CPython 3.12 Linux glibc 2.28+ x86-64 |
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twine/6.1.0 CPython/3.13.7
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Transparency logRelease files / precellar-0.5.1-cp311-cp311-manylinux_2_28_x86_64.whl
| Download URL | precellar-0.5.1-cp311-cp311-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 15.4 MB |
| Tags | CPython 3.11 Linux glibc 2.28+ x86-64 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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twine/6.1.0 CPython/3.13.7
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| Download URL | precellar-0.5.1-cp310-cp310-manylinux_2_28_x86_64.whl |
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| Size | 15.4 MB |
| Tags | CPython 3.10 Linux glibc 2.28+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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twine/6.1.0 CPython/3.13.7
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| Download URL | precellar-0.5.1-cp39-cp39-manylinux_2_28_x86_64.whl |
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| Size | 15.4 MB |
| Tags | CPython 3.9 Linux glibc 2.28+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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| Uploaded via |
twine/6.1.0 CPython/3.13.7
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