prepare data for running magma from unorganized gwas data
Project description
cleanmagma
- To retrieve the information from GWAS summary statistics file for running magma.
- To run magma with snp to gene annotation, gene level and gene set level enrichment.
- To summarize the results for the same input gmt files (named gene list) enriched to multiple GWAS data and plot a heatmap with rows are given input gmt names and columns are different GWAS file names.
See examples in docs/
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