This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

Features

proScatter enables multiple features, for example:

python proScatter.py test.fasta K test.html --scale --zoom=Prot1-Prot2 --evalue=0.001

Details are given below:

–scale

Scales both plot and output so that only the amino acids of interest are considered. Axes are in units of amino acids of interest (ex: 1st lysine, 2nd lysine, etc)

–zoom=Prot1-Prot2

Zooms in on only one subplot (Prot1 vs Prot2). As an added feature, clicking on any point in the scatter plot will print the coordinates of that point in the console.

–evalue=#

Considers only links with a score below a certain number #. Scores are expected to be in the 5th column

usage: proScatter.py [-h] [-a AMINOACIDS] [-z ZOOM] [-s] [-e EVALUE] [-u]
                     [-o OUTPUT] [-v]
                     fasta_file plink

positional arguments:
  fasta_file            fasta file with protein sequences
  plink                 pLink output .html file

optional arguments:
  -h, --help            show this help message and exit
  -a AMINOACIDS, --aminoacids AMINOACIDS
                        cross-linkable aminoacids. Defaults to Lysine (K).
  -z ZOOM, --zoom ZOOM  Prot1-Prot2 only display subplot for proteins Prot1 vs
                        Prot2
  -s, --scale           scale both plot and outputs so that only amino acids
                        of interest are considered
  -e EVALUE, --evalue EVALUE
                        e-value cutoff
  -u, --unjoin          unjoin plot axes
  -o OUTPUT, --output OUTPUT
                        output file (HTML) name
  -v, --verbose         increase output verbosity
Release History

Release History

0.0.2

This version

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

Show More

0.0.1

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

Show More

0.0.1a0

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

Show More

Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
proScatter-0.0.2-py2-none-any.whl (12.2 kB) Copy SHA256 Checksum SHA256 py2 Wheel Sep 2, 2015

Supported By

WebFaction WebFaction Technical Writing Elastic Elastic Search Pingdom Pingdom Monitoring Dyn Dyn DNS Sentry Sentry Error Logging CloudAMQP CloudAMQP RabbitMQ Heroku Heroku PaaS Kabu Creative Kabu Creative UX & Design Fastly Fastly CDN DigiCert DigiCert EV Certificate Rackspace Rackspace Cloud Servers DreamHost DreamHost Log Hosting