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Project knowledge orchestrator and MCP server for research repositories

Project description

projio

Project knowledge orchestrator and MCP server for research repositories.

Generates project scaffolding (.projio/ workspace, Makefile, mkdocs.yml, and optional kind-specific starters), builds project websites, and exposes a FastMCP server (stdio) that gives Claude unified access to indexio, biblio, notio, and codio tools.

Install

pip install projio
# or editable with all ecosystem packages:
make dev

Quick start

# Scaffold .projio/ workspace
projio init .

# Scaffold a thin package/tool project
projio init . --kind tool

# Scaffold a thin study project
projio init . --kind study

# Generated Makefile shortcuts
make projio-status
make projio-auth

# Scaffold ~/.config/projio/config.yml
projio config init-user

# Show merged user + project config
projio config -C . show

# Show status
projio status -C .

# Start MCP server (stdio)
projio mcp -C .

# Site operations
projio site build
projio site serve

# Project helpers
projio sibling github
projio sibling gitlab
projio sibling ria
projio docs mkdocs-init
projio auth doctor

For MkDocs projects, projio can also mount the indexio chatbot. Set site.chatbot.enabled: true in .projio/config.yml; projio site serve will auto-start a local indexio backend and inject the widget into the served site.

Helper config

Project-local defaults live in .projio/config.yml under helpers:. Optional user defaults live in ~/.config/projio/config.yml and are merged first, with project config taking precedence. For GitHub and GitLab, DataLad/Git config remains the source of truth for site, access, and stored credentials; projio only fills project-local conventions and previews the resulting commands.

Helper commands are preview-first. Pass --yes to execute the generated datalad command.

MCP tools exposed

Tool Description
rag_query Semantic search against the project index
rag_query_multi Multi-query search, deduplicated
corpus_list List indexed corpora with chunk counts
citekey_resolve Resolve BibTeX citekeys (requires biblio)
paper_context Full paper context with docling excerpt (requires biblio)
paper_absent_refs Unresolved GROBID refs (requires biblio)
library_get Library ledger status/tags (requires biblio)
note_list List recent notes (requires notio)
note_latest Most recent note content (requires notio)
note_read Read a specific note by path (requires notio)
note_create Create a new note from template (requires notio)
note_update Update note frontmatter fields (requires notio)
note_types List configured note types (requires notio)
note_search Semantic search over notes (requires notio)
codio_list Filtered library listing (requires codio)
codio_get Full library record (requires codio)
codio_registry Full registry snapshot (requires codio)
codio_vocab Controlled vocabulary for registry fields (requires codio)
codio_validate Registry consistency check (requires codio)
codio_discover Capability search across libraries (requires codio)
codio_add_urls Add libraries from GitHub/GitLab URLs (requires codio)
biblio_ingest Ingest papers by DOI via OpenAlex (requires biblio)
biblio_library_set Bulk-update library ledger entries (requires biblio)
project_context Project config + README snapshot
runtime_conventions Parsed Makefile vars and commands
site_detect Detect doc framework (mkdocs, sphinx, vite)
site_serve Start doc server in background
site_stop Stop a running doc server
site_list List running doc servers

Claude Desktop / MCP config

{
  "mcpServers": {
    "projio": {
      "command": "/path/to/python",
      "args": ["-m", "projio.mcp.server"],
      "env": { "PROJIO_ROOT": "/path/to/your/project" }
    }
  }
}

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