This release is a pre-release and may not be stable for production use.
prolance (Python)
Python bindings for ProLance, a Lance-backed mass-spectrometry data store.
Install (dev)
From the workspace root:
cd crates/prolance-py
maturin develop --release
Usage
import prolance
store = prolance.Store.open("/tmp/plstore")
run_id = store.ingest_mzml("path/to/run.mzML")
# Build scalar indexes once after a bulk ingest.
store.create_default_indexes()
runs = store.runs()
print(runs[0]["run_id"], runs[0]["spectrum_count"])
# RT window query, MS1 only, first 50 hits.
hits = store.query_window(run_id, rt_min=0.0, rt_max=120.0,
ms_level=1, limit=50)
for h in hits:
print(h["scan_num"], h["rt"], len(h["mz"]))
chroms = store.chromatograms(run_id)
1 maintainer
Metadata
1 maintainer
Release files for prolance 0.2.0a0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| prolance-0.2.0a0.tar.gz | 64.5 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| prolance-0.2.0a0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details |
| prolance-0.2.0a0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ x86-64 | Details |
| prolance-0.2.0a0-cp39-abi3-macosx_11_0_arm64.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64 | Details |
| prolance-0.2.0a0-cp39-abi3-macosx_10_12_x86_64.whl | CPython 3.9 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 141.5 MB
Release files / prolance-0.2.0a0.tar.gz
| Download URL | prolance-0.2.0a0.tar.gz |
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| Size | 64.5 kB |
| Tags | Source |
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| Size | 39.2 MB |
| Tags | CPython 3.9 Windows x86-64 abi3 |
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| Size | 35.6 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 abi3 |
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| Size | 34.8 MB |
| Tags | CPython 3.9 abi3 macOS 10.12+ x86-64 |
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