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Model Context Protocol (MCP) server for Prometheux - enabling AI agents to interact with knowledge graphs and reasoning

Project description

Prometheux MCP Server

PyPI version Python 3.10+ License: BSD-3-Clause

A Model Context Protocol (MCP) client that enables AI agents like Claude to interact with Prometheux knowledge graphs and reasoning capabilities.


For Users

What This Does

This package lets you use Claude Desktop to interact with your Prometheux projects:

  • List concepts in your projects
  • Run concepts to derive new knowledge
  • All through natural conversation with Claude

Prerequisites

  • Prometheux account with access to a deployed instance
  • Claude Desktop installed on your machine
  • Your authentication token from your Prometheux account settings

Installation

Option 1: Automated Install (Recommended)

The easiest way to install - download and run our installation script:

macOS/Linux:

curl -sSL https://raw.githubusercontent.com/prometheuxresearch/px-mcp-server/main/install.sh | bash

Or download and run manually:

wget https://raw.githubusercontent.com/prometheuxresearch/px-mcp-server/main/install.sh
chmod +x install.sh
./install.sh

Windows (PowerShell):

Invoke-WebRequest -Uri "https://raw.githubusercontent.com/prometheuxresearch/px-mcp-server/main/install.ps1" -OutFile "install.ps1"
.\install.ps1

The script will:

  • ✅ Install pipx (if not already installed)
  • ✅ Install prometheux-mcp package
  • ✅ Prompt for your credentials (URL, token, username, organization)
  • ✅ Automatically configure Claude Desktop
  • ✅ Create backups of existing configuration

Then just restart Claude Desktop and you're ready!

Option 2: Manual Install Using pipx

If you prefer manual installation, use pipx to install the package in an isolated environment:

macOS:

brew install pipx
pipx ensurepath
pipx install prometheux-mcp

Windows:

pip install pipx
pipx ensurepath
pipx install prometheux-mcp

Linux:

pip install pipx
pipx ensurepath
pipx install prometheux-mcp

Configuration

Note: If you used the automated installation script (Option 1), configuration was done automatically. Skip to the "Using Prometheux with Claude" section below.

For manual installations (Option 2):

  1. Get your credentials from your Prometheux account settings:

    • Server URL (e.g., https://api.prometheux.ai)
    • Authentication token
    • Username
    • Organization
  2. Configure Claude Desktop by editing the config file:

    macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
    Windows: %APPDATA%\Claude\claude_desktop_config.json

    Configuration Example:

    {
      "mcpServers": {
        "prometheux": {
          "command": "/Users/YOUR_USERNAME/.local/bin/prometheux-mcp",
          "args": ["--url", "https://api.prometheux.ai"],
          "env": {
            "PROMETHEUX_TOKEN": "your_token_here",
            "PROMETHEUX_USERNAME": "your_username",
            "PROMETHEUX_ORGANIZATION": "your_org"
          }
        }
      }
    }
    

    Finding Your Path: Run this in your terminal to find the full path:

    • macOS/Linux: which prometheux-mcp
    • Windows: where prometheux-mcp (in PowerShell or Command Prompt)

    Common paths after pipx install:

    • macOS: /Users/YOUR_USERNAME/.local/bin/prometheux-mcp
    • Windows: C:\\Users\\YOUR_USERNAME\\.local\\bin\\prometheux-mcp.exe (use double backslashes in JSON)
    • Linux: /home/YOUR_USERNAME/.local/bin/prometheux-mcp

    Note: Username and organization are required for API routing through the gateway.

    Custom URLs: For on-premise deployments or custom URLs, replace https://api.prometheux.ai with your own server URL.

  3. Restart Claude Desktop (quit completely with Cmd+Q, then reopen)

Usage

Once configured, just chat with Claude:

"What concepts are available in project customer-analytics?"

"Run the churn_prediction concept in project customer-analytics"

"Show me the high_value_customers from project sales-data with min_value of 1000"

Available Tools

Tool Description
list_concepts Lists all concepts in a project
run_concept Executes a concept to derive new knowledge

Troubleshooting

"command not found" or "Server disconnected" errors:

macOS:

  1. Find the full path: which prometheux-mcp
  2. Use that full path in your config (usually /Users/YOUR_USERNAME/.local/bin/prometheux-mcp)
  3. If still having issues, try pipx: pipx install prometheux-mcp
  4. Restart Claude Desktop completely (Cmd+Q, then reopen)

Windows:

  1. Find the full path: where prometheux-mcp (in PowerShell or Command Prompt)
  2. Use that full path in your config with double backslashes (e.g., C:\\Users\\YOUR_USERNAME\\.local\\bin\\prometheux-mcp.exe)
  3. Restart Claude Desktop

"Connection refused" error: Check that your Prometheux server URL is correct and accessible. Test with: curl [YOUR_URL]/mcp/info

"Authentication failed" error: Verify your token is correct in the config. Generate a new token from your Prometheux account settings if needed.

Check logs:

  • macOS: ~/Library/Logs/Claude/mcp-server-prometheux.log
  • Windows: %APPDATA%\Claude\logs\mcp-server-prometheux.log

For Developers

This section is for developers who want to:

  • Contribute to this package
  • Test locally with a development JarvisPy instance
  • Understand the architecture

Architecture

┌─────────────────────────────────────────────────────────────────────────┐
│                           YOUR MACHINE                                   │
│  ┌─────────────────┐         ┌─────────────────┐                        │
│  │  Claude Desktop │         │ prometheux-mcp  │                        │
│  │                 │──stdio──│  (this package) │                        │
│  │   (AI Agent)    │         │                 │                        │
│  └─────────────────┘         └────────┬────────┘                        │
└───────────────────────────────────────┼─────────────────────────────────┘
                                        │ HTTP
                                        ▼
                          ┌─────────────────────────┐
                          │     Prometheux Server   │
                          │       (JarvisPy)        │
                          │                         │
                          │   Cloud or On-Premise   │
                          └─────────────────────────┘

Key points:

  • This is NOT a service you run — Claude Desktop starts it automatically
  • Communication with Claude Desktop is via stdio (stdin/stdout)
  • Communication with Prometheux is via HTTP
  • Stateless — each Claude session starts a fresh instance

Local Development Setup

# Clone the repository
git clone https://github.com/prometheuxresearch/px-mcp-server.git
cd px-mcp-server

# Create virtual environment
python -m venv venv
source venv/bin/activate

# Install in development mode
pip install -e ".[dev]"

Testing with Local JarvisPy

  1. Start JarvisPy in development mode:

    cd /path/to/jarvispy
    source venv/bin/activate
    RUN_MODE=development python run.py
    
  2. Install your local package with pipx (required for Claude Desktop on macOS):

    pipx install /path/to/px-mcp-server --force
    
  3. Configure Claude Desktop to use localhost:

    {
      "mcpServers": {
        "prometheux": {
          "command": "/Users/YOUR_USERNAME/.local/bin/prometheux-mcp",
          "args": ["--url", "http://localhost:8000", "--debug"],
          "env": {
            "PROMETHEUX_TOKEN": "your_dev_token",
            "PROMETHEUX_USERNAME": "your_username",
            "PROMETHEUX_ORGANIZATION": "your_org"
          }
        }
      }
    }
    
  4. Restart Claude Desktop and test

Why pipx for macOS?

Claude Desktop on macOS cannot access virtual environments in protected folders (like ~/Documents) due to security restrictions. pipx installs to ~/.local/ which is accessible.

Running Tests

pytest

Code Quality

ruff check src/    # Linting
mypy src/          # Type checking

Project Structure

src/prometheux_mcp/
├── __init__.py      # Package exports
├── __main__.py      # CLI entry point (Click-based)
├── config.py        # Configuration management
├── client.py        # HTTP client for Prometheux API
├── server.py        # MCP server and tool definitions
└── tools/           # Reserved for future tool modules

Building for PyPI

python -m build
twine upload dist/*

Tool Reference

list_concepts

Lists all concepts available in a project.

Parameters:

Parameter Type Required Default Description
project_id string Yes Project identifier
scope string No "user" "user" or "organization"

Example response:

{
  "concepts": [
    {
      "predicate_name": "customer",
      "fields": {"id": "string", "name": "string"},
      "column_count": 2,
      "is_input": true,
      "row_count": 1000,
      "type": "postgresql",
      "description": "Customer records"
    }
  ],
  "count": 1
}

run_concept

Executes a concept to derive new knowledge through Vadalog reasoning.

Parameters:

Parameter Type Required Default Description
project_id string Yes Project identifier
concept_name string Yes Concept to execute
params object No {} Parameters for reasoning
scope string No "user" "user" or "organization"
force_rerun boolean No true Re-execute even if cached
persist_outputs boolean No false Save results to database

Example response:

{
  "concept_name": "high_value_customers",
  "message": "Concept executed successfully",
  "evaluation_results": {
    "resultSet": {
      "high_value_customers": [["Alice", 5000], ["Bob", 3000]]
    },
    "columnNames": {
      "high_value_customers": ["name", "total_value"]
    }
  },
  "predicates_populated": ["high_value_customers"],
  "total_records": 2
}

For Maintainers

Releasing a New Version

# 1. Update version
echo "0.1.6" > version.txt

# 2. Build and publish to PyPI
python -m build
twine upload dist/*

# 3. Commit and tag
git add version.txt
git commit -m "Release version 0.1.6"
git push
git tag v0.1.6
git push origin v0.1.6

Users will automatically get the new version when they run the installation script or pipx install prometheux-mcp.


Access to Prometheux Backend

The Prometheux backend is required to use this MCP client. To request access:

License

BSD 3-Clause License — see LICENSE file for details.

About Prometheux

Prometheux is an ontology native data engine that processes data anywhere it lives. Define ontologies once and unlock knowledge that spans databases, warehouses, and platforms—built on the Vadalog reasoning engine.

Key capabilities:

  • Connect: Query across Snowflake, Databricks, Neo4j, SQL, CSV, and more without ETL or vendor lock-in
  • Think: Replace 100+ lines of PySpark/SQL with simple declarative logic. Power graph analytics without GraphDBs
  • Explain: Full lineage & traceability with deterministic, repeatable results. Ground AI in structured, explainable context

Exponentially faster and simpler than traditional approaches. Learn more at prometheux.ai.

Support

For issues, questions, or access requests:

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