Proper scoring rules in Python
Project description
Proper scoring rules for evaluating probabilistic forecasts in Python. Evaluation methods that are “strictly proper” cannot be artificially improved through hedging, which makes them fair methods for accessing the accuracy of probabilistic forecasts. In particular, these rules are often used for evaluating weather forecasts.
properscoring runs on both Python 2 and 3. It requires NumPy (1.8 or later) and SciPy (any recent version should be fine). Numba is optional, but highly encouraged: it enables significant speedups (e.g., 20x faster) for crps_ensemble and threshold_brier_score.
To install, use pip: pip install properscoring.
Example: five ways to calculate CRPS
This library focuses on the closely related Continuous Ranked Probability Score (CRPS) and Brier Score. We like these scores because they are both interpretable (e.g., CRPS is a generalization of mean absolute error) and easily calculated from a finite number of samples of a probability distribution.
We will illustrate how to calculate CRPS against a forecast given by a Gaussian random variable. To begin, import properscoring:
import numpy as np import properscoring as ps from scipy.stats import norm
Exact calculation using crps_gaussian (this is the fastest method):
>>>> ps.crps_gaussian(0, mu=0, sig=1) 0.23369497725510913
Numerical integration with crps_quadrature:
>>> ps.crps_quadrature(0, norm) array(0.23369497725510724)
From a finite sample with crps_ensemble:
>>> ensemble = np.random.RandomState(0).randn(1000) >>> ps.crps_ensemble(0, ensemble) 0.2297109370729622
Weighted by PDF values with crps_ensemble:
>>> x = np.linspace(5, 5, num=1000) >>> ps.crps_ensemble(0, x, weights=norm.pdf(x)) 0.23370047937569616
Based on the threshold decomposition of CRPS with threshold_brier_score:
>>> threshold_scores = ps.threshold_brier_score(0, ensemble, threshold=x) >>> (x[1]  x[0]) * threshold_scores.sum(axis=1) 0.22973090090090081
In this example, we only scored a single observation/forecast pair. But to reliably evaluate a forecast model, you need to average these scores across many observations. Fortunately, all scoring rules in properscoring happily accept and return observations as multidimensional arrays:
>>> ps.crps_gaussian([2, 1, 0, 1, 2], mu=0, sig=1) array([ 1.45279182, 0.60244136, 0.23369498, 0.60244136, 1.45279182])
Once you calculate an average score, is often useful to normalize them relative to a baseline forecast to calculate a socalled “skill score”, defined such that 0 indicates no improvement over the baseline and 1 indicates a perfect forecast. For example, suppose that our baseline forecast is to always predict 0:
>>> obs = [2, 1, 0, 1, 2] >>> baseline_score = ps.crps_ensemble(obs, [0, 0, 0, 0, 0]).mean() >>> forecast_score = ps.crps_gaussian(obs, mu=0, sig=1).mean() >>> skill = (baseline_score  forecast_score) / baseline_score >>> skill 0.27597311068630859
A standard normal distribution was 28% better at predicting these five observations.
API
properscoring contains optimized and extensively tested routines for scoring probability forecasts. These functions currently fall into two categories:
Continuous Ranked Probability Score (CRPS):
for an ensemble forecast: crps_ensemble
for a Gaussian distribution: crps_gaussian
for an arbitrary cumulative distribution function: crps_quadrature
Brier score:
for binary probability forecasts: brier_score
for threshold exceedances with an ensemble forecast: threshold_brier_score
All functions are robust to missing values represented by the floating point value NaN.
History
This library was written by researchers at The Climate Corporation. The original authors include Leon Barrett, Stephan Hoyer, Alex Kleeman and Drew O’Kane.
License
Copyright 2015 The Climate Corporation
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
Contributions
Outside contributions (bug fixes or new features related to proper scoring rules) would be very welcome! Please open a GitHub issue to discuss your plans.
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