protein-turnover-website 0.9.3

Protein Turnover web pipeline

protein_turnover_website

Website for protein turnover

installation

pip install protein_turnover
pip install protein_turnover_website
# run the website (both frontend and back)
turnover web

Run just the website:

FLASK_APP=protein_turnover_website.wsgi flask run
# *OR*
gunicorn --workers=4 protein_turnover_website.wsgi

A posssibly superior entry point is to use uv. With uv installed you can install protein-turnover (+plus website) with

uv tool install protein-turnover-website[server]

# on Windows use this.... (pyarrow not yet supported for 3.14 -- as of Oct 2025)
uv tool install protein-turnover-website --python=3.13 --with=waitress

# ...
turnover web

# OR try it out with...

uv run --with=protein-turnover-website[server] turnover web

You can then just run turnover web.

You can even just try out the website ....

# OR just
uv run --with=protein-turnover-website --with=gunicorn turnover web -- --access-logfile=-

Configure turnover website

You can run this as simple:

In the instance folder create a file protein_turnover_website.cfg

MOUNTPOINTS = [
    ("/path/to/msms/files", "nickname"),
    # only show mzML file here
    ("/another/path/to/msms/files", "nickname", r".*\.mzML$")

]

Run the website with turnover web and go the the configuration.html page for more information.