pubmed-cited-by 1.0.0

Get cited by information from Pubmed

Get cited by information from Pubmed.

Installation

python3 -m pip install pubmed-cited-by

Usage

set API_KEY in environment variable [recommend]

see more: https://account.ncbi.nlm.nih.gov/settings/#api-key

echo NCBI_API_KEY=<your_api_key> >> ~/.bashrc

Use in Python

from pubmed_cited_by.core import PubmedCitedBy

pcb = PubmedCitedBy()

result = pcb.get_cited_by_data(1)
print(result)

pmids = [1, 2, 3]
data = pcb.get_cited_by(pmids)
for item in data:
    print(item)

Use in CMD

pubmed_cited_by --help

pubmed_cited_by  1 2 3
pubmed_cited_by  pmid.list

pubmed_cited_by  1 2 3 -o output.xlsx
pubmed_cited_by  1 2 3 -o output.csv
pubmed_cited_by  1 2 3 -o output.tsv
pubmed_cited_by  1 2 3 -o output.json
pubmed_cited_by  1 2 3 -o output.jl