Automates the initial screening phase of systematic PubMed search using keywords.
Project description
PubMed Screen
Automates the initial screening phase of systematic PubMed search using keywords.
Developing
To install this package for development on Linux:
- Create a virtual environment.
$ python3 -m venv venv
$ source venv/bin/activate
- Install an editable development version of the package with
pip.
$ pip3 install --editable .[dev]
-
Edit the
src/pubmed_screen/main.pyfile to make changes. -
Run the script with the
pmscreencommand that was installed by pip.
$ pmscreen
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Welcome to PubMed Screen.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PubMed Screen allows you to optimize your search strategy.
Would you like to create a search (enter: 1) or compare searches (enter: 2)?
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