py-connectome-analysis 1.0.2

Methods for network analysis of graphs coming from brain models and activity on them

connectome_analysis

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Documentation: https://danielaegassan.github.io/connectome_analysis

Source Code: https://github.com/danielaegassan/connectome_analysis

PyPI: https://pypi.org/project/connectome_analysis/

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Library of general functions to analyze connectoms.

Installation

pip install connectome_analysis

Development

• Clone this repository

• Requirements:

  • Poetry
  • gcc 9
  • CMake
  • Python 3.8+

• Create a virtual environment and install the dependencies

poetry install

CMake may have difficulties to find the right compilers to compile the C++ code. If that is the case, you have to specify the path to the compilers yourself:

CC=/path/to/gcc CXX=/path/to/g++ poetry install

This is especially important on MacOS.

• Activate the virtual environment

poetry shell

Testing

pytest tests

Documentation

The documentation is automatically generated from the content of the docs directory and from the docstrings of the public signatures of the source code. The documentation is updated and published as a Github project page automatically as part each release.