pyPhasesRecordloaderCFS 0.2.0

Adds a record loaders to the pyPhases package

Extension for pyPhasesRecordloader

Extension to load data records from the Multi-Ethnic Study of Atherosclerosis (CFS) database.

The extensions requires a downloaded version of the CFS dataset. The location can be set through the config value cfs-path.

Usage

In a phase you can acess the data through the RecordLoader:

Add the plugins and config values to your project.yaml:

name: MyProject
plugins:
  - pyPhasesML
  - pyPhasesRecordloaderCFS
  - pyPhasesRecordloader

phases:
  - name: MyPhase

config:
  cfs-path: C:/datasets/cfs

In a phase (phases/MyPhase.py) you can acess the records through the RecordLoader:

from pyPhasesRecordloader import RecordLoader
from pyPhases import Phase

class MyPhase(Phase):
    def run(self):
      recordIds = recordLoader.getRecordList()
      for recordId in recordIds:
        record = recordLoader.getRecord(recordId)

Run Your project with python -m phases run MyPhase