Extension for pyPhasesRecordloader
Extension to load data records from the MrOS Sleep Study (MrOS) database.
The extensions requires a downloaded version of the mros dataset. The location can be set through the config value mros-path.
Usage
In a phase you can acess the data through the RecordLoader:
Add the plugins and config values to your project.yaml:
name: MrOSProject
plugins:
- pyPhasesML
- pyPhasesRecordloaderMrOS
- pyPhasesRecordloader
phases:
- name: MyPhase
config:
mros-path: C:/datasets/mros
In a phase (phases/MyPhase.py) you can acess the records through the RecordLoader:
from pyPhasesRecordloader import RecordLoader
from pyPhases import Phase
class MyPhase(Phase):
def run(self):
recordIds = recordLoader.getRecordList()
for recordId in recordIds:
record = recordLoader.getRecord(recordId)
Run Your project with python -m phases run MyPhase
Annotations
| Count | EventConcept |
|---|---|
| 1452282 | SpO2 desaturation|SpO2 desaturation |
| 684753 | Periodic leg movement - right|PLM (Right) |
| 663100 | Periodic leg movement - left|PLM (Left) |
| 624159 | ASDA arousal|Arousal (ASDA) |
| 411225 | Limb movement - right|Limb Movement (Right) |
| 399403 | Limb movement - left|Limb Movement (Left) |
| 296939 | Unsure|Unsure |
| 283691 | Hypopnea|Hypopnea |
| 207671 | SpO2 artifact|SpO2 artifact |
| 187852 | Stage 2 sleep|2 |
| 173961 | Wake|0 |
| 120933 | Obstructive apnea|Obstructive Apnea |
| 111248 | Stage 1 sleep|1 |
| 83140 | Stage 3 sleep|3 |
| 43650 | REM sleep|5 |
| 32577 | Central apnea|Central Apnea |
| 4745 | Stage 4 sleep|4 |
| 3930 | Recording Start Time |
| 3754 | Arousal|Arousal () |
| 1095 | Arousal|Arousal (ARO Limb) |
| 193 | Periodic breathing|Periodic Breathing |
| 133 | Arousal|Arousal (Asda) |
| 80 | Mixed apnea|Mixed Apnea |
| 58 | Tachycardia|Tachycardia |
| 27 | Arousal resulting from respiratory effort|Arousal (ARO RES) |
| 26 | Respiratory effort related arousal|RERA |
| 8 | Respiratory artifact|Respiratory artifact |
| 2 | Unscored|9 |
| 2 | Narrow complex tachycardia|Narrow Complex Tachycardia |
| 2 | Blood pressure artifact|Blood pressure artifact |
| 1 | Spontaneous arousal|Arousal (ARO SPONT) |
1 maintainer
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