pyPhasesRecordloaderMrOS 0.8.1

Adds a record loaders to the pyPhases package

Extension for pyPhasesRecordloader

Extension to load data records from the MrOS Sleep Study (MrOS) database.

The extensions requires a downloaded version of the mros dataset. The location can be set through the config value mros-path.

Usage

In a phase you can acess the data through the RecordLoader:

Add the plugins and config values to your project.yaml:

name: MrOSProject
plugins:
  - pyPhasesML
  - pyPhasesRecordloaderMrOS
  - pyPhasesRecordloader

phases:
  - name: MyPhase

config:
  mros-path: C:/datasets/mros

In a phase (phases/MyPhase.py) you can acess the records through the RecordLoader:

from pyPhasesRecordloader import RecordLoader
from pyPhases import Phase

class MyPhase(Phase):
    def run(self):
      recordIds = recordLoader.getRecordList()
      for recordId in recordIds:
        record = recordLoader.getRecord(recordId)

Run Your project with python -m phases run MyPhase

Annotations

Count	EventConcept
1452282	SpO2 desaturation|SpO2 desaturation
684753	Periodic leg movement - right|PLM (Right)
663100	Periodic leg movement - left|PLM (Left)
624159	ASDA arousal|Arousal (ASDA)
411225	Limb movement - right|Limb Movement (Right)
399403	Limb movement - left|Limb Movement (Left)
296939	Unsure|Unsure
283691	Hypopnea|Hypopnea
207671	SpO2 artifact|SpO2 artifact
187852	Stage 2 sleep|2
173961	Wake|0
120933	Obstructive apnea|Obstructive Apnea
111248	Stage 1 sleep|1
83140	Stage 3 sleep|3
43650	REM sleep|5
32577	Central apnea|Central Apnea
4745	Stage 4 sleep|4
3930	Recording Start Time
3754	Arousal|Arousal ()
1095	Arousal|Arousal (ARO Limb)
193	Periodic breathing|Periodic Breathing
133	Arousal|Arousal (Asda)
80	Mixed apnea|Mixed Apnea
58	Tachycardia|Tachycardia
27	Arousal resulting from respiratory effort|Arousal (ARO RES)
26	Respiratory effort related arousal|RERA
8	Respiratory artifact|Respiratory artifact
2	Unscored|9
2	Narrow complex tachycardia|Narrow Complex Tachycardia
2	Blood pressure artifact|Blood pressure artifact
1	Spontaneous arousal|Arousal (ARO SPONT)