pybioportal: a Python package to easily retrieve data from cBioPortal
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What is it?
pybioportal is an open source, BSD-licensed Python library that provides a set of functions to facilitate data acquisition from the cBioPortal Web Public API and the transformation of that data into useful data structures.
It allows users to easily query the cBioPortal public API and retrieve the data directly in the form of a pandas DataFrame, making the data accessible and ready for analysis.
It is an essential tool for researchers and biological data analysts who wish to access and leverage cBioPortal resources for their research and bioinformatic analysis projects.
Where to get it
The source code is currently hosted on GitHub at: https://github.com/Matteo-Valerio/pyBioPortal
Binary installers for the latest released version are available at the Python Package Index (PyPI) and on Anaconda.
# PyPI
pip install pybioportal
# Anaconda
conda install -c matteo.valerio pybioportal
License
Documentation
The official documentation is hosted on ReadtheDocs.
Contributing to pybioportal
Bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome and can be made
on 
1 maintainer
Metadata
1 maintainer
Release files for pybioportal 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| pybioportal-1.0.1.tar.gz | 16.6 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pybioportal-1.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 46.9 kB
Release files / pybioportal-1.0.1.tar.gz
| Download URL | pybioportal-1.0.1.tar.gz |
|---|---|
| Size | 16.6 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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No |
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twine/4.0.2 CPython/3.11.5
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Release files / pybioportal-1.0.1-py3-none-any.whl
| Download URL | pybioportal-1.0.1-py3-none-any.whl |
|---|---|
| Size | 30.3 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.5
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Security for pybioportal 1.0.1
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