pybioprox 1.0.3

Distance-based colocalisation analysis module

PyBioProx: 2 & 3d spatial distance analysis in Python

This module, pybioprox, offers efficient 2d and 3d spatial analysis of colocalisation. The analyses fall into the category of object-based colocalisation methods.

Installation

To install this Python module, you may use pip as follows:

    pip install pybioprox 

If you wish to also install the optional Graphical User Interface script, this may be done by specifying the gui optional extra:

    pip install pybioprox[gui]

Getting started

Once installed, the module can be invoked from the command-line using:

    python -m pybioprox <path_to_folder> 

to run the analysis in batch mode on all data files at the location path_to_folder.

If you have installed the gui component or already have the required gui libraries, present on your system, then you may also run

    pybioprox_gui

directly from the command line.