BK-tree data structure to allow fast querying of "close" matches
pybktree is a generic, pure Python implementation of a BK-tree data structure, which allows fast querying of “close” matches (for example, matches with small hamming distance or Levenshtein distance). This module is based on the algorithm by Nick Johnson in his blog article on BK-trees.
The library is on the Python Package Index (PyPI) and works on both Python 3 and Python 2.7. To install it, fire up a command prompt, activate your virtual environment if you’re using one, and type:
pip install pybktree
>>> tree = pybktree.BKTree(pybktree.hamming_distance, [0, 4, 5, 14]) >>> tree.add(15) # add element 15 >>> sorted(tree) # BKTree instances are iterable [0, 4, 5, 14, 15] >>> sorted(tree.find(13, 1)) # find elements at most 1 bit away from element 13 [(1, 5), (1, 15)]
For large trees and fairly small N when calling find(), using a BKTree is much faster than doing a linear search. This is especially good when you’re de-duping a few hundred thousand photos – with a linear search that would become a very slow, O(N²) operation. With a BKTree, it’s more like O(N log N).
Read the code in pybktree.py for more details – it’s pretty small!
Other BK-tree modules I found on GitHub while writing this one:
- ahupp/bktree: this one is pretty good, but it’s not on PyPI, and it’s recursive
- ryanfox/bktree: this one is hard to customize, search() doesn’t return distances, it’s slower, and was buggy (though I think he fixed it recently)
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