pybreathe 0.0.0

A python package for respiratory air flow rates analysis

pybreathe: a python package for respiratory air flow rates analysis

Get started

First of all, we highly recommend that you install miniconda on your machine.

To set up the virtual environment required for respiratory flow analysis, open Anaconda prompt, copy the full package path and move to it with $ cd package_path. Then, please run (only the first time):

$ conda env create -f environment.yml
$ conda activate venv_pybreathe
$ python -m ipykernel install --user --name=venv_pybreathe

Then, every time you want to analyze data, activate the virtual environment with:

$ conda activate venv_pybreathe

and run the example script (or any other) with:

$ jupyter lab example.ipynb

/!\ You must either be in the same directory as your .ipynb file, or specify the absolute path.

Finally, to quit the analysis, please follow these steps:

• Right clic on your .ipynb file in the tree, then "Shut Down Kernel"
• Clic on "File", the "Shut Down"
• When you regain control in your terminal, run:

$ conda deactivate