A python package for chromVAR
Project description
pychromVAR
pychromVAR is a python package for inferring transcription factor binding variability from scATAC-seq data by implmenting the algorithm proposed in chromVAR. It is built on anndata and mudata therefore can work seamlessly with Scanpy and Muon pipeline.
For more methodological details, please refer to the paper.
Installation
The quickest and easiest way to get pychromvar is to to use pip:
pip install pychromvar
Tutorial
You can find here a tutorial how to use pychromVAR combined with Muon to analysis multimodal single-cell PBMC data.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file pychromvar-0.0.4.tar.gz.
File metadata
- Download URL: pychromvar-0.0.4.tar.gz
- Upload date:
- Size: 266.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: python-requests/2.28.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0a51858770dced41b62f629c083885a5165531a6e24d918a94f578b53613f088
|
|
| MD5 |
a7a9623ba93129de12fbdea3efe7bd26
|
|
| BLAKE2b-256 |
2e369b99d8dd8a63f774094e208f7d871f8553b605cc416f3a7e61eecbf8b7d0
|
File details
Details for the file pychromvar-0.0.4-py3-none-any.whl.
File metadata
- Download URL: pychromvar-0.0.4-py3-none-any.whl
- Upload date:
- Size: 8.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: python-requests/2.28.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
64b6187f2a9e81dbf4a38e8a704140441dc68c9776755b6255360ac39a4921bf
|
|
| MD5 |
1670f50f3bc8a7c9963adb6db908fd43
|
|
| BLAKE2b-256 |
2362c3cac7c030f315274c2559fcd18551b7b43ffac3f27a7fab5ac803fb2082
|
