PyChunkedGraph
The PyChunkedGraph is a proofreading and segmentation data management backend with (not limited to) the following features:
- Concurrent proofreading by multiple users without restrictions on the workflow
- Continuous versioning of proofreading edits
- Making changes visible to all users immediately
- Local mincut computations
Scaling to large datasets
Deployment
While the PyChunkedGraph can be deployed as a stand-alone entity, we deploy it within our annotation infrastructure which uses a CI Kubernetes deployment. We will make instructions and scripts for a mostly automated deployment to Google Cloud available soon.
Building your own PyChunkedGraph
System Design
As a backend the PyChunkedGraph can be combined with any frontend that adheres to its API. We use an adapted version of neuroglancer which is publicly available.
3 maintainers
Metadata
3 maintainers
Release files for PyChunkedGraph 0.1.113
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| PyChunkedGraph-0.1.113.tar.gz | 87.6 kB | Without provenance | Details for PyChunkedGraph-0.1.113.tar.gz |
Release files / PyChunkedGraph-0.1.113.tar.gz
| Download URL | PyChunkedGraph-0.1.113.tar.gz |
|---|---|
| Size | 87.6 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
dd7811bd34c11f7bff7acccb82dd9a558e444520ffcb629bfec38584ad30d7d0
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.2
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Security for PyChunkedGraph 0.1.113
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