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This Tools is Design for NGS Circos Plot with using Python.

Project description

# Python Modules for Circos Plot

[![Build Status](https://travis-ci.com/KimBioInfoStudio/PyCircos.svg?branch=develop)](https://travis-ci.com/KimBioInfoStudio/PyCircos) ![codecov](https://codecov.io/gh/KimBioInfoStudio/PyCircos/branch/develop/graph/badge.svg)

## 1. Pre Installation

> As official, Pyhton2 will end life form 2020-1-1, So we develop a new version support Python3.5+, We deeply recommand all users using the python version 3.5+, Thx!

### Python 3.5+ packages(automatically installed)

  1. numpy
  2. pandas
  3. matplotlib

## 2. Installation ### intall dev branch

  1. install from source code

` git clone https://github.com/KimBioInfoStudio/PyCircos.git cd PyCircos pip install -r requirements.txt python3 setup.py install [--user] `

  1. or install form source code with using ‘make’

` git clone https://github.com/KimBioInfoStudio/PyCircos.git cd PyCircos make install `

  1. install release branch

` pip install pycircos `

## 3. Examples ### command

` cd ./test/ python3 test.py open ./demo.png ` ### results

![](./test/demo.png)

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