pydactim 1.0.17

A library to post-process MRI data

PyDactim

Description

Warning : Currently in development

A MRI preprocessing tool which provides a dozen of functions easy to use made from some of the most popular Python libraries 🚀

It includes :

• Transformations : skull stripping, resampling, registration, histogram matching, bias field correction, normalization and so on
• Preprocessing : BIDS compatible, preprocess all of your patient data with only two lines of code
• Conversion : Dicom to Nifti, Nifti to Dicom
• Sorting : an elegant way to organize your Dicom files
• Anonymization : Dicom files can be anonymized according to your own rules
• Visualization : 2D and 3D light viewer
• Spectroscopy : generation of mask of the MRS voxel/slab

Installation

Requires at least Python 3.7 or above. This library uses a lot of common libraries in image processing as such as Pytorch, Torchio, Numpy, Nibabel, SimpleITK, Matplotlib, Pydicom, Dicom2nifti and so more !

Can be quickly installed with pip :

pip install pydactim