Pydantic models for the OME-NGFF
Project description
pydantic-ome-ngff
about
Pydantic models for OME-NGFF metadata. Only the latest version (v0.5-dev) of OME-NGFF is currently supported.
supported metadata models:
multiscales(spec)axes(spec)coordinateTransformations(spec)plate(spec)well(spec)imageLabel(spec)
omero and bioformats2raw are not supported.
Note that these models will validate the contents of the various metadata fields, but cannot ensure that the metadata is structurally valid in the context of an array container -- e.g., these models cannot check that the number of axes in multiscales.axes matches the rank of arrays stored in the group bearing that multiscales metadata. This requires a representation of the group / array hierarchy as pydantic models, which is in progress.
installation
pip install pydantic-ome-ngff
development
- clone this repo
- install poetry
- run
poetry install --with devto get dev dependencies - run
pre-commit installto install pre-commit hooks
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