Pydantic models for the OME-NGFF
Project description
pydantic-ome-ngff
about
Pydantic models for OME-NGFF metadata. Versions 0.4 and the latest (v0.5-dev) are currently supported.
supported metadata models:
multiscales(spec)axes(spec)coordinateTransformations(spec)plate(spec)well(spec)imageLabel(spec)
omero and bioformats2raw are not currently supported, but contributions adding
support for those models would be welcome.
Support for container-level validation (i.e., checking that multiscale or coordinate transformation metadata is compatible with a hierarchical array / group layout) is being added incrementally.
installation
pip install pydantic-ome-ngff
development
- clone this repo
- install poetry
- run
poetry install --with devto get dev dependencies - run
pre-commit installto install pre-commit hooks
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