pyft 0.1.3

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pyft: python bindings for fibertools-rs

pyft provides a python API for the rust library fibertools-rs. The inspiration for this API is to make analysis in python easier and faster; therefore, only extraction of data from a fiberseq bam is supported and not writing.

Install

pip install pyft

Example

import pyft
bam_f = "../tests/data/center.bam"
fiberdata = pyft.FiberdataFetch(bam_f, "chr1", 0, 1000)
for fiber in fiberdata:
    # print some info about the fiber
    print(fiber)
    # print the fiber number of ccs passes
    print(fiber.ec)    
    # print the mps start positions
    print(fiber.msp.starts)