Python API for accessing Genomic Data Commons
Basic API
Cases
from pygdc import get_cases
from pygdc.filters import equals_filter
results = get_cases(
filters=equals_filter('project.primary_site', 'Lung'),
fields='demographic.gender,project.disease_type',
max_results=50
)Cohorts Example
Using cohorts
import pygdc
pygdc.build_cohort(
primary_site='Lung',
cohort_cache_dir='cache-dir')
Release files for pygdc 0.0.2
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| pygdc-0.0.2.tar.gz | 24.1 kB | Without provenance | Details |
Release files / pygdc-0.0.2.tar.gz
| Download URL | pygdc-0.0.2.tar.gz |
|---|---|
| Size | 24.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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Uploaded using Trusted Publishing? What is trusted publishing? |
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Security for pygdc 0.0.2
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