Python API for accessing Genomic Data Commons
Basic API
Cases
from pygdc import get_cases
from pygdc.filters import equals_filter
results = get_cases(
filters=equals_filter('project.primary_site', 'Lung'),
fields='demographic.gender,project.disease_type',
max_results=50
)Cohorts Example
Using cohorts
import pygdc
pygdc.build_cohort(
primary_site='Lung',
cohort_cache_dir='cache-dir')
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