pyensembl

Last released Feb 16, 2023

Python interface to ensembl reference genome metadata

gtfparse

Last released Dec 22, 2022

GTF Parsing

datacache

Last released Dec 20, 2022

Helpers for transparently downloading datasets

varcode

Last released Nov 29, 2022

Variant annotation in Python

mhctools

Last released Oct 9, 2020

Python interface to running command-line and web-based MHC binding predictors

vaxrank

Last released Aug 19, 2020

Mutant peptide ranking for personalized cancer vaccines

isovar

Last released Aug 19, 2020

Determine mutant protein sequences from RN using assembly around variants

serializable

Last released Oct 27, 2019

Base class with serialization helpers for user-defined Python objects

stancache

Last released Jan 16, 2019

Filecache for stan models

survivalstan

Last released Jan 15, 2019

Library of Stan Models for Survival Analysis

topiary

Last released Feb 26, 2018

Predict cancer epitopes from cancer sequence data

mhcnames

Last released Feb 26, 2018

Python library for MHC nomenclature parsing

pepdata

Last released Feb 26, 2018

Immunological peptide datasets and amino acid properties

stanity

Last released Jan 3, 2018

Helper library for working with Stan models in Python

cohorts

Last released Dec 30, 2017

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released Jul 19, 2017

Neural networks for amino acid sequences

topeology

Last released Nov 11, 2016

Compare epitope homology

pygdc

Last released Sep 27, 2016

Python API for Genomic Data Commons