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Username   hammerlab

Date joined   Joined on

18 projects

varcode

Last released on

Variant annotation in Python

serializable

Last released on

Base class with serialization helpers for user-defined Python objects

isovar

Last released on

Determine mutant protein sequences from RN using assembly around variants

pyensembl

Last released on

Python interface to ensembl reference genome metadata

mhctools

Last released on

Python interface to running command-line and web-based MHC binding predictors

vaxrank

Last released on

Mutant peptide ranking for personalized cancer vaccines

stancache

Last released on

Filecache for stan models

survivalstan

Last released on

Library of Stan Models for Survival Analysis

gtfparse

Last released on

GTF Parsing

datacache

Last released on

Helpers for transparently downloading datasets

topiary

Last released on

Predict cancer epitopes from cancer sequence data

mhcnames

Last released on

Python library for MHC nomenclature parsing

pepdata

Last released on

Immunological peptide datasets and amino acid properties

stanity

Last released on

Helper library for working with Stan models in Python

cohorts

Last released on

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released on

Neural networks for amino acid sequences

topeology

Last released on

Compare epitope homology

pygdc

Last released on

Python API for Genomic Data Commons

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