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hammerlab

hammerlab

Joined on Feb 25, 2015

Projects

cohorts

Last released on Jun 5, 2017

Utilities for analyzing mutations and neoepitopes in patient cohorts

datacache

Last released on Oct 31, 2016

Helpers for transparently downloading datasets

gtfparse

Last released on May 10, 2016

GTF Parsing

isovar

Last released on Jun 21, 2017

Assemble transcript sequences fragments near variants

mhctools

Last released on Jun 21, 2017

Python interface to running command-line and web-based MHC binding predictors

pepdata

Last released on Jan 9, 2017

Immunological peptide datasets and amino acid properties

pyensembl

Last released on Jan 24, 2017

Python interface to ensembl reference genome metadata

pygdc

Last released on Sep 27, 2016

Python API for Genomic Data Commons

serializable

Last released on Oct 28, 2016

Base class with serialization helpers for user-defined Python objects

stancache

Last released on Mar 17, 2017

Filecache for stan models

stanity

Last released on Jul 20, 2016

Helper library for working with Stan models in Python

survivalstan

Last released on Jan 6, 2017

Library of Stan Models for Survival Analysis

topeology

Last released on Nov 11, 2016

Compare epitope homology

topiary

Last released on May 4, 2017

Predict cancer epitopes from cancer sequence data

varcode

Last released on Apr 28, 2017

Variant annotation in Python

vaxrank

Last released on Jun 22, 2017

Mutant peptide ranking for personalized cancer vaccines

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