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  hammerlab

  Joined on Feb 25, 2015

18 projects

vaxrank

Last released on May 24, 2018

Mutant peptide ranking for personalized cancer vaccines

isovar

Last released on May 21, 2018

Assemble transcript sequences fragments around variants

varcode

Last released on Feb 26, 2018

Variant annotation in Python

pyensembl

Last released on Feb 26, 2018

Python interface to ensembl reference genome metadata

topiary

Last released on Feb 26, 2018

Predict cancer epitopes from cancer sequence data

mhctools

Last released on Feb 26, 2018

Python interface to running command-line and web-based MHC binding predictors

mhcnames

Last released on Feb 26, 2018

Python library for MHC nomenclature parsing

pepdata

Last released on Feb 26, 2018

Immunological peptide datasets and amino acid properties

gtfparse

Last released on Feb 26, 2018

GTF Parsing

datacache

Last released on Feb 26, 2018

Helpers for transparently downloading datasets

stanity

Last released on Jan 3, 2018

Helper library for working with Stan models in Python

cohorts

Last released on Dec 30, 2017

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released on Jul 19, 2017

Neural networks for amino acid sequences

stancache

Last released on Mar 17, 2017

Filecache for stan models

survivalstan

Last released on Jan 6, 2017

Library of Stan Models for Survival Analysis

topeology

Last released on Nov 11, 2016

Compare epitope homology

serializable

Last released on Oct 28, 2016

Base class with serialization helpers for user-defined Python objects

pygdc

Last released on Sep 27, 2016

Python API for Genomic Data Commons

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