18 projects
topiary
Predict, filter, and rank MHC-presented peptides from any antigen source
vaxrank
Mutant peptide ranking for personalized cancer vaccines
isovar
Determine mutant protein sequences from RNA using assembly around variants
mhctools
Python interface to MHC binding, presentation, immunogenicity, and antigen processing predictors
varcode
Variant annotation in Python
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
pyensembl
Python interface to Ensembl reference genome metadata
datacache
Helpers for transparently downloading datasets
serializable
Base class with serialization helpers for user-defined Python objects
pepdata
Immunological peptide datasets and amino acid properties
stancache
Filecache for stan models
survivalstan
Library of Stan Models for Survival Analysis
mhcnames
Python library for MHC nomenclature parsing
stanity
Helper library for working with Stan models in Python
cohorts
Utilities for analyzing mutations and neoepitopes in patient cohorts
pepnet
Neural networks for amino acid sequences
topeology
Compare epitope homology
pygdc
Python API for Genomic Data Commons
