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Username    hammerlab
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18 projects

pyensembl

Last released

Python interface to ensembl reference genome metadata

mhctools

Last released

Python interface to running command-line and web-based MHC binding predictors

vaxrank

Last released

Mutant peptide ranking for personalized cancer vaccines

isovar

Last released

Determine mutant protein sequences from RN using assembly around variants

gtfparse

Last released

GTF Parsing

varcode

Last released

Variant annotation in Python

serializable

Last released

Base class with serialization helpers for user-defined Python objects

stancache

Last released

Filecache for stan models

survivalstan

Last released

Library of Stan Models for Survival Analysis

datacache

Last released

Helpers for transparently downloading datasets

topiary

Last released

Predict cancer epitopes from cancer sequence data

mhcnames

Last released

Python library for MHC nomenclature parsing

pepdata

Last released

Immunological peptide datasets and amino acid properties

stanity

Last released

Helper library for working with Stan models in Python

cohorts

Last released

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released

Neural networks for amino acid sequences

topeology

Last released

Compare epitope homology

pygdc

Last released

Python API for Genomic Data Commons

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