varcode

Last released May 26, 2026

Variant annotation in Python

vaxrank

Last released May 22, 2026

Mutant peptide ranking for personalized cancer vaccines

topiary

Last released May 18, 2026

Predict, filter, and rank MHC-presented peptides from any antigen source

isovar

Last released May 16, 2026

Determine mutant protein sequences from RNA using assembly around variants

gtfparse

Last released May 13, 2026

Parsing library for extracting data frames of genomic features from GTF files

pyensembl

Last released May 13, 2026

Python interface to Ensembl reference genome metadata

mhctools

Last released May 8, 2026

Python interface to MHC binding, presentation, immunogenicity, and antigen processing predictors

serializable

Last released Apr 20, 2026

Base class with serialization helpers for user-defined Python objects

pepdata

Last released Apr 8, 2026

Immunological peptide datasets and amino acid properties

datacache

Last released Apr 5, 2026

Helpers for transparently downloading datasets

stancache

Last released Jan 16, 2019

Filecache for stan models

survivalstan

Last released Jan 15, 2019

Library of Stan Models for Survival Analysis

mhcnames

Last released Feb 26, 2018

Python library for MHC nomenclature parsing

stanity

Last released Jan 3, 2018

Helper library for working with Stan models in Python

cohorts

Last released Dec 30, 2017

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released Jul 19, 2017

Neural networks for amino acid sequences

topeology

Last released Nov 11, 2016

Compare epitope homology

pygdc

Last released Sep 27, 2016

Python API for Genomic Data Commons