Python API for Genomic Data Commons
Project description
Python API for accessing Genomic Data Commons
Basic API
Cases
from pygdc import get_cases from pygdc.filters import equals_filter results = get_cases( filters=equals_filter('project.primary_site', 'Lung'), fields='demographic.gender,project.disease_type', max_results=50 )
Cohorts Example
Using cohorts
import pygdc pygdc.build_cohort( primary_site='Lung', cohort_cache_dir='cache-dir')
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| Filename, size | File type | Python version | Upload date | Hashes |
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| Filename, size pygdc-0.0.2.tar.gz (24.1 kB) | File type Source | Python version None | Upload date | Hashes View hashes |
