pygdc 0.0.2

Python API for Genomic Data Commons

Python API for accessing Genomic Data Commons

Basic API

Cases

from pygdc import get_cases
from pygdc.filters import equals_filter


results = get_cases(
    filters=equals_filter('project.primary_site', 'Lung'),
    fields='demographic.gender,project.disease_type',
    max_results=50
)

Cohorts Example

Using cohorts

import pygdc

pygdc.build_cohort(
    primary_site='Lung',
    cohort_cache_dir='cache-dir')