Pyggseqlogo
Python version of ggseqlogo. Based on plotnine (Python version of ggplot2). A derivative of plotnineSeqSuite.
Cite this work
Cao, T., Li, Q., Huang, Y. et al. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style. BMC Genomics 24, 585 (2023). https://doi.org/10.1186/s12864-023-09677-8
Installation
pip install pyggseqlogo
Getting Started
from plotnine import ggplot
from plotnineseqsuite import geom_logo
from plotnineseqsuite.data import seqs_dna
from pyggseqlogo import ggseqlogo, theme_logo
The code is based on plotnineSeqSuite.
ggplot() + geom_logo(data=seqs_dna['MA0001.1']) + theme_logo()
Pyggseqlogo provides a wrapper function for the above code.
ggseqlogo(seqs_dna['MA0001.1'])
facet_wrap
ggseqlogo(seqs_dna, ncol=4)
Where to go next
If you want to draw more complex sequence logos or other sequence-related diagrams, we recommend visiting the plotnineSeqSuite homepage for details.
1 maintainer
Metadata
1 maintainer
Release files for pyggseqlogo 1.2.0
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| File | Size | Uploaded | Provenance | Actions |
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| pyggseqlogo-1.2.0.tar.gz | 3.6 kB | Without provenance | Details for pyggseqlogo-1.2.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
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| pyggseqlogo-1.2.0-py3-none-any.whl | Python 3 | none | any | Details for pyggseqlogo-1.2.0-py3-none-any.whl |
Total release size: 7.4 kB
Release files / pyggseqlogo-1.2.0.tar.gz
| Download URL | pyggseqlogo-1.2.0.tar.gz |
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Release files / pyggseqlogo-1.2.0-py3-none-any.whl
| Download URL | pyggseqlogo-1.2.0-py3-none-any.whl |
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| Size | 3.9 kB |
| Tags | Python 3 |
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