Python version of ggseqlogo. Based on plotnine (Python version of ggplot2). A derivative of plotnineSeqSuite.
Project description
Pyggseqlogo
Python version of ggseqlogo. Based on plotnine (Python version of ggplot2). A derivative of plotnineSeqSuite.
Cite this work
Cao, T., Li, Q., Huang, Y. et al. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style. BMC Genomics 24, 585 (2023). https://doi.org/10.1186/s12864-023-09677-8
Installation
pip install pyggseqlogo
Getting Started
from plotnine import ggplot
from plotnineseqsuite import geom_logo
from plotnineseqsuite.data import seqs_dna
from pyggseqlogo import ggseqlogo, theme_logo
The code is based on plotnineSeqSuite.
ggplot() + geom_logo(data=seqs_dna['MA0001.1']) + theme_logo()
Pyggseqlogo provides a wrapper function for the above code.
ggseqlogo(seqs_dna['MA0001.1'])
facet_wrap
ggseqlogo(seqs_dna, ncol=4)
Where to go next
If you want to draw more complex sequence logos or other sequence-related diagrams, we recommend visiting the plotnineSeqSuite homepage for details.
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