pygros

a python library for finding genomic range overlaps based on cgranges.

Installation

pygros is available on PyPi, to install it:

pip install pygros

Usage

>>> import pygros
>>> ranges = pygros.Ranges()
>>> ranges.add('chr1', 10, 20)
>>> ranges.add('chr1', 30, 50)
>>> ranges.add('chr1', 25, 40)
>>> ranges.index()
>>> ranges.overlap('chr1', 30, 40)
[(25, 40, -1), (30, 50, -1)]

API reference

pygros.Ranges(intervals=[])

create a Ranges object to store genomic ranges

@param intervals: a list or tuple containing multiple ranges

@return Ranges object

add(chrom, start, end, label=-1)

add genomic range into Ranges object

@param chrom: chromosome name or sequence name

@param start: start of range

@param end: end of range

@param label: an integer

index()

After add new genomic ranges, use this method to build index

overlap(chrom, start, end)

get genomic ranges that overlapped with your given range (start, end)

@param chrom: chromosome or sequence name

@param start: start of range

@param end: end of range

@return: a list of ranges

within(chrom, start, end)

get genomic ranges within given range (start, end)

@param chrom: chromosome or sequence name

@param start: start of range

@param end: end of range

@return: a list of ranges

contain(chrom, start, end)

get genomic ranges that contained in given range (start, end)

@param chrom: chromosome or sequence name

@param start: start of range

@param end: end of range

@return: a list of ranges

Metadata

Release files for pygros 0.3.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for pygros 0.3.0
File	Size	Uploaded
pygros-0.3.0.tar.gz	5.0 kB	Jun 11, 2026	Details

Built distributions (wheels)

Table of built distributions (wheels) for pygros 0.3.0
File	Interpreter	ABI	Platform	Reset
pygros-0.3.0-cp313-cp313-win_amd64.whl 12.7 kB Jun 11, 2026	CPython 3.13	CPython 3.13	Windows x86-64	Details
pygros-0.3.0-cp313-cp313-musllinux_1_2_x86_64.whl 36.9 kB Jun 11, 2026	CPython 3.13	CPython 3.13	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp313-cp313-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 37.4 kB Jun 11, 2026	CPython 3.13	CPython 3.13	Linux glibc 2.5+ x86-64, Linux glibc 2.28+ x86-64	Details
pygros-0.3.0-cp313-cp313-macosx_11_0_arm64.whl 12.2 kB Jun 11, 2026	CPython 3.13	CPython 3.13	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp313-cp313-macosx_10_13_x86_64.whl 12.5 kB Jun 11, 2026	CPython 3.13	CPython 3.13	macOS 10.13+ x86-64	Details
pygros-0.3.0-cp312-cp312-win_amd64.whl 12.7 kB Jun 11, 2026	CPython 3.12	CPython 3.12	Windows x86-64	Details
pygros-0.3.0-cp312-cp312-musllinux_1_2_x86_64.whl 36.7 kB Jun 11, 2026	CPython 3.12	CPython 3.12	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp312-cp312-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 37.6 kB Jun 11, 2026	CPython 3.12	CPython 3.12	Linux glibc 2.5+ x86-64, Linux glibc 2.28+ x86-64	Details
pygros-0.3.0-cp312-cp312-macosx_11_0_arm64.whl 12.2 kB Jun 11, 2026	CPython 3.12	CPython 3.12	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp312-cp312-macosx_10_13_x86_64.whl 12.5 kB Jun 11, 2026	CPython 3.12	CPython 3.12	macOS 10.13+ x86-64	Details
pygros-0.3.0-cp311-cp311-win_amd64.whl 12.7 kB Jun 11, 2026	CPython 3.11	CPython 3.11	Windows x86-64	Details
pygros-0.3.0-cp311-cp311-musllinux_1_2_x86_64.whl 36.2 kB Jun 11, 2026	CPython 3.11	CPython 3.11	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 36.9 kB Jun 11, 2026	CPython 3.11	CPython 3.11	Linux glibc 2.28+ x86-64, Linux glibc 2.5+ x86-64	Details
pygros-0.3.0-cp311-cp311-macosx_11_0_arm64.whl 12.2 kB Jun 11, 2026	CPython 3.11	CPython 3.11	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp311-cp311-macosx_10_9_x86_64.whl 12.5 kB Jun 11, 2026	CPython 3.11	CPython 3.11	macOS 10.9+ x86-64	Details
pygros-0.3.0-cp310-cp310-win_amd64.whl 12.7 kB Jun 11, 2026	CPython 3.10	CPython 3.10	Windows x86-64	Details
pygros-0.3.0-cp310-cp310-musllinux_1_2_x86_64.whl 36.5 kB Jun 11, 2026	CPython 3.10	CPython 3.10	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp310-cp310-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 36.9 kB Jun 11, 2026	CPython 3.10	CPython 3.10	Linux glibc 2.5+ x86-64, Linux glibc 2.28+ x86-64	Details
pygros-0.3.0-cp310-cp310-macosx_11_0_arm64.whl 12.2 kB Jun 11, 2026	CPython 3.10	CPython 3.10	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp310-cp310-macosx_10_9_x86_64.whl 12.5 kB Jun 11, 2026	CPython 3.10	CPython 3.10	macOS 10.9+ x86-64	Details
pygros-0.3.0-cp39-cp39-win_amd64.whl 12.7 kB Jun 11, 2026	CPython 3.9	CPython 3.9	Windows x86-64	Details
pygros-0.3.0-cp39-cp39-musllinux_1_2_x86_64.whl 36.2 kB Jun 11, 2026	CPython 3.9	CPython 3.9	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp39-cp39-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 36.6 kB Jun 11, 2026	CPython 3.9	CPython 3.9	Linux glibc 2.5+ x86-64, Linux glibc 2.28+ x86-64	Details
pygros-0.3.0-cp39-cp39-macosx_11_0_arm64.whl 12.2 kB Jun 11, 2026	CPython 3.9	CPython 3.9	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp39-cp39-macosx_10_9_x86_64.whl 12.5 kB Jun 11, 2026	CPython 3.9	CPython 3.9	macOS 10.9+ x86-64	Details
pygros-0.3.0-cp38-cp38-win_amd64.whl 12.6 kB Jun 11, 2026	CPython 3.8	CPython 3.8	Windows x86-64	Details
pygros-0.3.0-cp38-cp38-musllinux_1_2_x86_64.whl 36.2 kB Jun 11, 2026	CPython 3.8	CPython 3.8	Linux musl 1.2+ x86-64	Details
pygros-0.3.0-cp38-cp38-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl 37.1 kB Jun 11, 2026	CPython 3.8	CPython 3.8	Linux glibc 2.5+ x86-64, Linux glibc 2.28+ x86-64	Details
pygros-0.3.0-cp38-cp38-macosx_11_0_arm64.whl 11.9 kB Jun 11, 2026	CPython 3.8	CPython 3.8	macOS 11.0+ ARM64	Details
pygros-0.3.0-cp38-cp38-macosx_10_9_x86_64.whl 12.2 kB Jun 11, 2026	CPython 3.8	CPython 3.8	macOS 10.9+ x86-64	Details

Total release size: 670.0 kB

Release files / pygros-0.3.0.tar.gz

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Release files / pygros-0.3.0-cp310-cp310-macosx_10_9_x86_64.whl

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Release files / pygros-0.3.0-cp39-cp39-win_amd64.whl

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Release files / pygros-0.3.0-cp39-cp39-musllinux_1_2_x86_64.whl

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Release files / pygros-0.3.0-cp39-cp39-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl

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Release files / pygros-0.3.0-cp39-cp39-macosx_11_0_arm64.whl

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Release files / pygros-0.3.0-cp39-cp39-macosx_10_9_x86_64.whl

Download URL	pygros-0.3.0-cp39-cp39-macosx_10_9_x86_64.whl
Size	12.5 kB
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Release files / pygros-0.3.0-cp38-cp38-win_amd64.whl

Download URL	pygros-0.3.0-cp38-cp38-win_amd64.whl
Size	12.6 kB
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Release files / pygros-0.3.0-cp38-cp38-musllinux_1_2_x86_64.whl

Download URL	pygros-0.3.0-cp38-cp38-musllinux_1_2_x86_64.whl
Size	36.2 kB
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Release files / pygros-0.3.0-cp38-cp38-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl

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Size	37.1 kB
Tags	CPython 3.8 Linux glibc 2.28+ x86-64 Linux glibc 2.5+ x86-64
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Release files / pygros-0.3.0-cp38-cp38-macosx_11_0_arm64.whl

Download URL	pygros-0.3.0-cp38-cp38-macosx_11_0_arm64.whl
Size	11.9 kB
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Release files / pygros-0.3.0-cp38-cp38-macosx_10_9_x86_64.whl

Download URL	pygros-0.3.0-cp38-cp38-macosx_10_9_x86_64.whl
Size	12.2 kB
Tags	CPython 3.8 macOS 10.9+ x86-64
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Release history Release notifications | RSS feed

This release

0.3.0 This release

Jun 11, 2026 31 release files

0.2.0

Jan 14, 2026 31 release files

0.1.4

Jul 16, 2024 25 release files

0.1.2

Sep 21, 2023 25 release files

pygros 0.3.0