Work with Kappa rule-based models in Python
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PyKappa
PyKappa is a Python package for working with rule-based models. It supports simulation and analysis of a wide variety of systems whose individual components interact as described by rules that transform these components in specified ways and at specified rates. See our website pykappa.org for a tutorial, examples, and documentation.
Development
Developer requirements can be installed via:
pip install -e ".[dev]"
To run correctness tests, run pytest.
Running ./tests/cpu-profiles/run_profiler.sh will CPU-profile predefined Kappa models and write the results to tests/cpu-profiles/results.
We use the Black code formatter, which can be run as black .
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