pymex 0.9.31

PYMEX: PSI-MI/IMEx Data Access

PYMEX package is a collection of modules providing tools for accessing interaction data distributed by The IMEx Consortium partners as well as for parsing, transformation and construction of PSI-MI endorsed interaction data files.

Modules

• pymex.xmlrecord - A generic, configurable XML record serializer/deserializer.
• pymex.mif - PSI-MI XML format support (versions 2.5.4 and 3.0.0).
• pymex.pypsiq - PSICQUC server access.

Quick Start

    from lxml import etree as ET
    import pymex.mif

    rec = pymex.mif.Record()
    rec.parseMif( file, 'mif254' )

    for interaction in rec.interactions:
       print( "Interaction type:",interaction.type.label )
       print( "Participant count:", len(interaction.participants))
       for participant in interaction.participants:   
          print(" Participant:",participant.interactor.label)
          print("   Host:", participant.interactor.host.label)
          print("   Type:", participant.interactor.type.label)
          print("   Sequence:", participant.interactor.sequence)

    recDom = rec.toMif( 'mif300' )
    print( ET.tostring(recDom,pretty_print=True).decode("utf-8") )

Further details: Pymex Wiki