PyMotifCounter
A unified Python interface to fast motif enumeration algorithms such as:
mfinder
fanmod
NetMODE
PGD
A typical usage example is as follows:
"""
Visualise the distribution of size-3 motifs.
"""
from pymotifcounter.concretecounters import PyMotifCounterMfinder
from matplotlib import pyplot as plt
from networkx import watts_strogatz_graph
if __name__ == "__main__":
# Create an example network
g = watts_strogatz_graph(100, 8, 0.2)
# Create a motif counter based on mfinder
motif_counter = PyMotifCounterMfinder()
# Enumerate motifs using the selected counter
g_mtf_count = motif_counter(g)
# Visualise the distribution
g_mtf_count.plot.bar("motif_id", "nreal")
plt.tight_layout()
plt.show()Which would produce the following distribution:
Installation
Latest release can be installed from pypi by > pip install pymotifcounter.
Latest development version can be obtained by cloning this repository
For more details please see the project’s documentation on readthedocs
1 maintainer
Metadata
1 maintainer
Release files for pymotifcounter 1.0.1
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