pynxtools-em is a pynxtools reader plugin for electron microscopy (EM) data.

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  • License: Apache Software License (Apache License)
  • Author: The NOMAD Authors
  • Requires: Python >=3.10
  • Provides-Extra: dev , docs , nomad , ipynb , batch
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Project description

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pynxtools-em: A pynxtools reader for EM data

pynxtools-em is a pynxtools reader plugin for electron microscopy (EM) data.

This pynxtools plugin was generated with cookiecutter using the pynxtools-plugin-template template.

Installation

It is recommended to use python 3.12 with a dedicated virtual environment for this package. Learn how to manage python versions and virtual environments.

This package is a reader plugin for pynxtools and should be installed together with pynxtools:

uv pip install pynxtools[em]

for the latest released version.

Purpose

This reader plugin for pynxtools is used to translate diverse file formats from the scientific community and technology partners within the field of electron microscopy into a standardized representation using the NeXus application definition NXem.

Docs

More information about this pynxtools plugin is available in the documentation. You will find information about getting started, how-to guides, the supported file formats, how to get involved, and much more there.

Contact person in FAIRmat for this reader

Markus Kühbach

How to cite this work

Kühbach, M., Shabih, S., Brockhauser, S., Spiecker, E., Weber, H., Koch, C., Draxl, C. (2025). pynxtools-em: A pynxtools reader plugin for electron microscopy (EM) data. Zenodo. https://doi.org/10.5281/zenodo.13951684

Project details

Verified details

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Project links
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Unverified details

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  • License: Apache Software License (Apache License)
  • Author: The NOMAD Authors
  • Requires: Python >=3.10
  • Provides-Extra: dev , docs , nomad , ipynb , batch
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This version

0.4.6

0.4.5

0.4.4

0.4.3

0.4.2

0.4.1

0.4.0

0.3.3

0.3.2

0.3.1

0.3.0

0.2

0.1.1

0.1

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