pynxtools-em: A pynxtools reader for EM data
pynxtools-em is a pynxtools reader plugin for electron microscopy (EM) data.
This pynxtools plugin was generated with cookiecutter using the pynxtools-plugin-template template.
Installation
It is recommended to use python 3.12 with a dedicated virtual environment for this package. Learn how to manage python versions and virtual environments.
This package is a reader plugin for pynxtools and should be installed together with pynxtools:
uv pip install pynxtools[em]
for the latest released version.
Purpose
This reader plugin for pynxtools is used to translate diverse file formats from the scientific community and technology partners
within the field of electron microscopy into a standardized representation using the NeXus application definition NXem.
Docs
More information about this pynxtools plugin is available in the documentation. You will find information about getting started, how-to guides, the supported file formats, how to get involved, and much more there.
Contact person in FAIRmat for this reader
Markus Kühbach
How to cite this work
Kühbach, M., Shabih, S., Brockhauser, S., Spiecker, E., Weber, H., Koch, C., Draxl, C. (2025). pynxtools-em: A pynxtools reader plugin for electron microscopy (EM) data. Zenodo. https://doi.org/10.5281/zenodo.13951684
1 maintainer
Metadata
1 maintainer
Release files for pynxtools-em 0.4.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pynxtools_em-0.4.6.tar.gz | 166.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pynxtools_em-0.4.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 436.6 kB
Release files / pynxtools_em-0.4.6.tar.gz
| Download URL | pynxtools_em-0.4.6.tar.gz |
|---|---|
| Size | 166.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
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Transparency logRelease files / pynxtools_em-0.4.6-py3-none-any.whl
| Download URL | pynxtools_em-0.4.6-py3-none-any.whl |
|---|---|
| Size | 270.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Jun 26, 2026.
Transparency log
