pyPDA
A Pythonic toolkit to generate synthetic blood pressure waveforms based on principle of pulse decomposition analysis (PDA).
Free software: MIT license
Quick Start
Use
It is recommended that pyPDA should be setup in a Python virtual environment.
python -m venv venv
source venv/bin/activate
pip install pyPDA
pypda pulse --plot-dir work_dir --png # plot single beat waveform to word_dir
# plot 10 second pulse waveform of 65 bpm, sampled at 90 Hz to word_dir
pypda sample --bpm 65 --plot-dir work_dir --png --length 10 --sampling-rate 90
from pypda.pulse_model import PulseModelRaw
pulse_waveform = PulseModelRaw()
import matplotlib.pyplot as plt
plt.plot(pulse_waveform.pulse_waveform)
from pypda.wavelets import TriangGaussian
triangular_pulse = TriangGaussian()
triangular_pulse.shift(10) # optional horizontal shifting of waveform
plt.plot(triangular_pulse.pulse_waveform)
# addition operator is supported
superpositioned_pulse = pulse_waveform + triangular_pulse
plt.plot(superpositioned_pulse.pulse_waveform)
Development
Please feel free to fork a copy on GitHUB. Pull requests are very welcome. To report an issue, please use GitHub issue tracker.
python -m venv venv
source venv/bin/activate
git clone git@github.com:taoyilee/pyPDA.git
pip install -r requirements_dev.txt
# Start coding.
Screen Capture
References
Baruch, Martin C., et al. “Pulse decomposition analysis of the digital arterial pulse during hemorrhage simulation.” Nonlinear biomedical physics 5.1 (2011): 1. [PDF]
History
0.1.0 (2020-02-19)
First release on PyPI.
0.2.1 (2020-03-02)
Add sampler for test data (different parameters)
Metadata
Release files for pypda 0.4.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pypda-0.4.2.tar.gz | 129.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pypda-0.4.2-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size: 141.1 kB
Release files / pypda-0.4.2.tar.gz
| Download URL | pypda-0.4.2.tar.gz |
|---|---|
| Size | 129.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / pypda-0.4.2-py2.py3-none-any.whl
| Download URL | pypda-0.4.2-py2.py3-none-any.whl |
|---|---|
| Size | 12.1 kB |
| Tags | Python 2 Python 3 |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.43.0 CPython/3.7.5
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