pypeh

pypeh is a lightweight ETL and data-ops toolkit for Personal Exposure and Health (PEH) data.

It helps you:

work with PEH-model resources in Python
load/transform/validate PEH study data
support FAIR data workflows (findable, accessible, interoperable, reusable)

The toolkit is built to interact with the PEH model from PARC:

https://github.com/eu-parc/parco-hbm

Install

Core package:

uv pip install pypeh

With dataframe adapter extras (Polars-based workflows):

uv pip install "pypeh[dataframe-adapter]"

Basic Usage

from pypeh import Session

# Start a session
session = Session()
# Load PEH model resources (e.g. YAML configs) into cache
session.load_persisted_cache(source="config")
# Load tabular data as a DatasetSeries using a DataImportConfig from cache
data_import_config = session.cache.get("<data_import_config_id>", "DataImportConfig")
dataset_series = session.load_tabular_dataset_series(
    source="my_data.xlsx",
    data_import_config=data_import_config,
)

From there you can use adapters for:

validation
enrichment (derived variables)
aggregation
export/persistence

Run Tests

make test-core
make test-dataframe
make test-rocrate

Documentation

Build the static documentation site with MkDocs:

make docs

Preview it locally:

make docs-serve

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pypeh-0.4.1.tar.gz (86.3 kB view details)

Uploaded Jul 9, 2026 Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

The dropdown lists show the available interpreters, ABIs, and platforms. Enable javascript to be able to filter the list of wheel files.

pypeh-0.4.1-py3-none-any.whl (103.9 kB view details)

Uploaded Jul 9, 2026 Python 3

File details

Details for the file pypeh-0.4.1.tar.gz.

File metadata

Download URL: pypeh-0.4.1.tar.gz
Upload date: Jul 9, 2026
Size: 86.3 kB
Tags: Source
Uploaded using Trusted Publishing? Yes
Uploaded via: twine/6.1.0 CPython/3.13.12

File hashes

Hashes for pypeh-0.4.1.tar.gz
Algorithm	Hash digest
SHA256	`ac9c88a86dbc8234f0366ada9798d92750f97046eaacdcbe372cd697645ae962`
MD5	`d75c495aa976e43cb8d9f3014537f832`
BLAKE2b-256	`874b89cd34fdd976d2394093b87469875376a44ed5c7f34ae9329b18c0938d2f`

See more details on using hashes here.

Provenance

The following attestation bundles were made for pypeh-0.4.1.tar.gz:

Publisher: publish.yml on eu-parc/pypeh

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Statement:
- Statement type: https://in-toto.io/Statement/v1
- Predicate type: https://docs.pypi.org/attestations/publish/v1
- Subject name: pypeh-0.4.1.tar.gz
- Subject digest: ac9c88a86dbc8234f0366ada9798d92750f97046eaacdcbe372cd697645ae962
- Sigstore transparency entry: 2128228339
- Sigstore integration time: Jul 9, 2026
Source repository:
- Permalink: eu-parc/pypeh@71a35bcf6cdeddc91b78d3a0ca1e9a2fc360cbc2
- Branch / Tag: refs/tags/v0.4.1
- Owner: https://github.com/eu-parc
- Access: public
Publication detail:
- Token Issuer: https://token.actions.githubusercontent.com
- Runner Environment: github-hosted
- Publication workflow: publish.yml@71a35bcf6cdeddc91b78d3a0ca1e9a2fc360cbc2
- Trigger Event: release