simple pipelines in python
Project description
Overview
A simple module for specifying and executing a sequence of commands, with up to 1 level of branching (where several tasks are executed in parallel) before continuing with a single line of execution.
Features
executes a sequences of command lines, allowing some steps to run in parallel, before proceeding sequentially again.
save command standard output to a log file.
use temp output files for each command until it completes successfully. Then move them to their final location.
by default don’t rerurn steps if the output file(s) exist and are newer than the input file(s).
run locally by default or on SGE (with –use_SGE) or LSF (with –use_LSF).
Project details
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