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a python module to read and write phylip alignment files

Project Description

About pyphylip

Read and write files in the phylip sequence format.

Installation

Because pyphylip has been packaged for pypi, it can be installed using:

$ pip install pyphylip

Usage

Decode a phylip sequence file given a source of lines in the file:

>>> with open('infile.phy') as f:
...     headers, sequences = pyphylip.decode(f)

Encode some headers and corresponding sequences as a phylip sequence file:

>>> with open('outfile.phy', 'w') as f:
...     f.write(pyphylip.encode(headers, sequences) + '\n')

Release history Release notifications

This version
History Node

0.0.2

History Node

0.0.1

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Filename, size & hash SHA256 hash help File type Python version Upload date
pyphylip-0.0.2.tar.gz (3.4 kB) Copy SHA256 hash SHA256 Source None Jun 29, 2010

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