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a python module to read and write phylip alignment files

Project description

About pyphylip

Read and write files in the phylip sequence format.

Installation

Because pyphylip has been packaged for pypi, it can be installed using:

$ pip install pyphylip

Usage

Decode a phylip sequence file given a source of lines in the file:

>>> with open('infile.phy') as f:
...     headers, sequences = pyphylip.decode(f)

Encode some headers and corresponding sequences as a phylip sequence file:

>>> with open('outfile.phy', 'w') as f:
...     f.write(pyphylip.encode(headers, sequences) + '\n')

Project details


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Files for pyphylip, version 0.0.2
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