Pythonic/Cythonic Nanopore Translocation Analysis
This project is for nanopore-translocation event finding/analysis. It’s written in Python, with numpy/scipy as a Matlab replacement. The gui library is pyside, and pyqtgraph is used for plotting. More information can be found here.
Note that Pypore/PyporeGui are pre-release, major changes can happen at any time.
Pull requests are welcome!
Pypore has the following dependencies:
PyporeGui depends on all of the above and:
Building from source additionally requires:
Running the tests requires:
Installing with pip
Pypore is currently pre-release, so we’ll install with the –pre tag.
pip install pypore --pre
A new dev release is deployed with every push to the develop branch, so upgrade often!
pip install pypore --pre --upgrade
Installing from source
Clone or download the source. In the directory (with setup.py), run one of the following:
python setup.py install
pip install .
Running the tests:
python setup.py tests
Start PyporeGui with:
import pyporegui pyporegui.start()
Copyright 2014 Will Parkin
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
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