RFConsolidate annotations coming from different annotators
Project description
pyprocessors_rf_consolidate
RFConsolidate annotations coming from different annotators
Installation
You can simply pip install pyprocessors_rf_consolidate.
Developing
Pre-requisites
You will need to install uv:
curl -LsSf https://astral.sh/uv/install.sh | sh
Clone the repository:
git clone https://github.com/oterrier/pyprocessors_rf_consolidate
Install dependencies
uv sync --extra test
Running the test suite
uv run pytest
Linting
uv run ruff check .
uv run ruff format --check .
Building the documentation
uv run --extra docs sphinx-build docs docs/_build
The built documentation is available at docs/_build/index.html.
SBOM & vulnerability check
Install the SBOM dependencies:
uv sync --extra sbom
Generate a CycloneDX SBOM from the current environment:
uv run cyclonedx-py environment -o sbom.cdx.json --output-format json
Audit dependencies for known vulnerabilities:
uv run pip-audit --format json --output audit-report.json
To fail on any known vulnerability (useful in CI):
uv run pip-audit --strict
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