Development purpose
git clone https://github.com/glaunay/pyproteins.git LOCAL_PATH_TO_REPO
Check for dependencies in LOCAL_PATH_TO_REPO/setup.py
sys.path.append(LOCAL_PATH_TO_REPO/src)
Deployment module
pip install pyproteins
Update pip module
TO DO
modules organization
container modules
Core
Frequently used container and functions. Downloading and parsing XML in a generic way. Two-level dictionnaries.
customCollection
Managment of a collection of object which can be constructed from flat files (ex: uniprot).
- collectionPath: path to a directory of flat files
- constructor: object constructor
- indexer function to map filename and collection key
sequence modules
msa
- Load alignemnt files
- Filter alignment
- Compute statistics
peptide
Fasta framed informations, like amino-acid types, domain boundaries and secondary structure states.
psipred
DEPRECATED
sequence alignment Modules
- nw_custom: the Needleman & Wunsch implementaion
- scoringFunctions : AA, AA/SS2, PWA
- scoringMatrix : Blosum62
utils modules
test Cecile
Release files for pyproteins 2.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyproteins-2.1.1.tar.gz | 57.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pyproteins-2.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 100.1 kB
Release files / pyproteins-2.1.1.tar.gz
| Download URL | pyproteins-2.1.1.tar.gz |
|---|---|
| Size | 57.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
uv/0.4.17
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Release files / pyproteins-2.1.1-py3-none-any.whl
| Download URL | pyproteins-2.1.1-py3-none-any.whl |
|---|---|
| Size | 42.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
53abcb912f545915d47b3c507758c9ccc228cefde4ef6cdc792563c407d64310
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.4.17
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