pypulsepal 0.4.3

Python API for the PulsePal open-source pulse train generator

PyPulsePal

Python API for the PulsePal open-source pulse train generator.

→ Full documentation

Example usage

Load and apply a saved config file:

from pypulsepal import PulsePal
from pypulsepal.config_io import load_config

cfg = load_config("my_params.json")   # or .yaml
with PulsePal.from_config(cfg, serial_port="/dev/ttyACM0") as pp:
    pp.trigger_selected_channels(channel_1=True)

Standard instantiation:

import time
from pypulsepal import PulsePal

pp = PulsePal(serial_port="/dev/ttyACM0")
pp.channel_configs[0].phase1Voltage = 5.0
pp.channel_configs[0].pulseTrainDuration = 1.0
pp.sync_all_params()
pp.trigger_selected_channels(channel_1=True)
time.sleep(1)
pp.stop_all_outputs()
pp.close()

As a context manager (saves settings and closes on exit automatically):

import time
from pypulsepal import PulsePal

with PulsePal(serial_port="/dev/ttyACM0") as pp:
    pp.channel_configs[0].phase1Voltage = 5.0
    pp.channel_configs[0].pulseTrainDuration = 1.0
    pp.sync_all_params()
    pp.trigger_selected_channels(channel_1=True)
    time.sleep(1)
    pp.stop_all_outputs()

Installation

pip install pypulsepal

With YAML config file support:

pip install "pypulsepal[yaml]"

From source:

git clone https://github.com/murineshiftwork/pypulsepal.git
cd pypulsepal
pip install -e ".[yaml]"

Citation

To cite PyPulsePal:

Rollik, Lars B. (2022). PyPulsePal: Python API for the PulsePal open-source pulse train generator. doi: 10.5281/zenodo.6379627.

@misc{rollik2022pypulsepal,
    author    = {Lars B. Rollik},
    title     = {{PyPulsePal: Python API for the PulsePal open-source pulse train generator}},
    year      = {2022},
    publisher = {Zenodo},
    url       = {https://doi.org/10.5281/zenodo.6379627},
    doi       = {10.5281/zenodo.6379627},
}

Please also cite the original PulsePal hardware and PyBpod publications that this package builds on.

License & sources

This software is released under the GNU GPL v3.0.

This work is derived from the Sanworks PulsePal Python API (commit: 5bb189f).

src/pypulsepal/_arcom.py is vendored from pybpod-api 1.8.2 (MIT, Copyright © 2016 Champalimaud Foundation) with minor adaptations.

Useful references

• PulsePal Python 3 API
• PulsePal USB v2 serial interface
• PulsePal parameter definitions
• PyBpod ArCOM