Pythonic interface to neuroglancer for displaying neuronal and synaptic data
Project description
Pythonic interface to neuroglancer for displaying neuronal data like neurons, synapses, meshes (surfaces, volumes), annotations (points) in the precomputed format.
Installation
The easiest way to install the package is via pip:
$ pip3 install pyroglancer
If you want to install the latest developments from GitHub:
$ pip3 install git+git://github.com/SridharJagannathan/pyroglancer@master
Documentation
(COMING SOON!) https://SridharJagannathan.github.io/pyroglancer
Features
- Fetch and display neurons from the hemibrain, FAFB dataset
- Display synapse annotations etc
Acknowledgements
Thanks to Jeremy Maitin-Shepard from google for inventing the precomputed format and answering many of my queries. The pyroglancer logo was inspired from PyPy. The pyroglancer critically depends on packages like NAVis for interfacing with neuron data.
Copyright & License
Copyright (c) 2021, Sridhar Jagannathan. 3-clause BSD License.
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